DN620231

Overview
NameDN620231
Unique NameDN620231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN620231 vs. ExPASy Swiss-Prot
Match: EXOC5_ARATH (Exocyst complex component 5 OS=Arabidopsis thaliana GN=SEC10 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 4.596e-52
Identity = 102/140 (72.86%), Postives = 115/140 (82.14%), Query Frame = 3 
Query:  204 FKGDFSFDALFGNLVNELLPSFQEEEADSADGHGNVSGNDTLPNGHKRASSDAIKFTQGLAAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAA 623
            FKGDFSFDALFGNLVN+LLPSF +EEADS DGHGN++G D L NGH R  S  +      +AP FPEVD L SLFKD+C+EL+DLRKQ+D RL  LKKE+S QDSKHRKTL E+EKGVDGLF+SFARLD RISSVGQTAA
Sbjct:   27 FKGDFSFDALFGNLVNDLLPSFLDEEADSGDGHGNIAGVDGLTNGHLRGQSAPLS-----SAPFFPEVDGLLSLFKDACKELVDLRKQVDGRLNTLKKEVSTQDSKHRKTLTEIEKGVDGLFESFARLDGRISSVGQTAA 161
[Close]
BLAST of DN620231 vs. ExPASy Swiss-Prot
Match: EXOC5_ORYSJ (Exocyst complex component 5 OS=Oryza sativa subsp. japonica GN=SEC10 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.177e-37
Identity = 85/140 (60.71%), Postives = 96/140 (68.57%), Query Frame = 3 
Query:  204 FKGDFSFDALFGNLVNELLPSFQEEEADSADGHGNVSGNDTLPNGHKRASSDAIKFTQGLAAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAA 623
            FKGDFSFDALFG LV+ELLP F+ ++A  A                            G A P+FP VD L  LFK SC+EL+DLR+QID RL NLKKE++ QD+KHRKTL ELEKGVDGLFDSFARLDSRISSVGQTAA
Sbjct:   20 FKGDFSFDALFGTLVDELLPEFRGDDAPGAPPPPPP--------------------VLGAAPPVFPAVDELLGLFKHSCKELVDLRRQIDKRLQNLKKEVATQDAKHRKTLGELEKGVDGLFDSFARLDSRISSVGQTAA 139
The following BLAST results are available for this feature:
BLAST of DN620231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EXOC5_ARATH4.596e-5272.86Exocyst complex component 5 OS=Arabidopsis thalian... [more]
EXOC5_ORYSJ4.177e-3760.71Exocyst complex component 5 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_05A10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0005A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620231 ID=DN620231; Name=DN620231; organism=Citrus sinensis; type=EST; length=625bp
CTGCAGGCACCTGGGCTCGATCTACTACCCAACCGAAGCTTACCAGAAAA
ACGCAAAAGGCCTGTATATCGTACCCCTCTCTCTGCTGTCTCGCTCCTTC
ACTCGCCGAAGAGATGAAAGAGAGTCGAGATGGAATCGGTCATGATAGAA
TTTCAAAATCGTCATCGGTTAGCTCTATTCCACTCATTCTTGACATAGAT
GACTTCAAGGGTGATTTTTCTTTTGATGCACTATTTGGGAACTTGGTGAA
TGAGCTTCTGCCCTCTTTTCAAGAAGAAGAAGCTGATTCAGCTGATGGAC
ATGGTAACGTTAGCGGGAATGATACTTTGCCAAACGGGCACAAACGGGCC
TCATCAGATGCAATAAAGTTCACACAAGGATTGGCCGCCCCTTTATTTCC
AGAAGTGGATGCTCTCTCATCTCTGTTCAAGGATTCTTGTAGGGAGCTGA
TAGATCTTCGTAAACAGATTGATGACAGACTCTTCAATCTCAAGAAAGAG
CTTTCTGTCCAAGATTCTAAACACCGCAAGACACTTGCTGAGCTAGAAAA
AGGTGTGGACGGCTTGTTTGATAGTTTTGCAAGATTAGATTCACGTATAT
CAAGTGTTGGACAGACTGCTGCCAA
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