EY720866

Overview
NameEY720866
Unique NameEY720866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 6.303e-80
Identity = 153/201 (76.12%), Postives = 169/201 (84.08%), Query Frame = 2
Query:  125 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLWVLDESDEMRSRRVRDPIICVPLSSTGSPGLFEFCPPPPQIL 727
            ++VFET++GVE I SF  MGIKDDLLRG+YQYGFEKPSAIQQRAV+PII GRDVIAQAQSGTGKTSMIALTVCQ VDT S EVQALILSPTRELA QTEKVILAIGD+IN+QAHAC+GGKSVGEDIRKLEHGV VVSGTPGRVCDMIKR+TLRTR IKL +LDESDEM SR  +D I  V          + + PP  Q++
Sbjct:    5 RLVFETSKGVEPIASFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRGIKLLILDESDEMLSRGFKDQIYDV----------YRYLPPELQVV 195          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 295.049 bits (754), Expect = 3.128e-79
Identity = 155/216 (71.76%), Postives = 176/216 (81.48%), Query Frame = 2
Query:  125 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLWVLDESDEMRSRRVRDPIICVPLSSTGSPGLFEFCPP-----------PPQILDMTT 739
            K+VFETT+G+E ITSF+ MGIK+D+LRG+Y+YGFEKPSAIQQRAVMPI++GRDVIAQAQSGTGKTSMIAL+VCQ VDTSSREVQALILSPTRELATQTEK I AIG   NIQAHAC+GG SVGEDIRKLEHGVHVVSGTPGRVCDMIKR++LRTRAIKL +LDESDEM SR  +D I  V          + + PP           P +IL+MT+
Sbjct:   22 KLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDV----------YRYLPPDLQVCLVSATLPHEILEMTS 227          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 9.102e-79
Identity = 157/227 (69.16%), Postives = 178/227 (78.41%), Query Frame = 2
Query:  128 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLWVLDESDEMRSRRVRDPIICVPLSSTGSPGLFEFCPP-----------PPQILDMT----TNS*RILAK 763
            + FET+ GVE I+SFD MGI+DDLLRGIY YGFEKPSAIQQRAV+PII GRDVIAQAQSGTGKTSMI+L+VCQ VDT+ REVQALILSPTRELA QTE+V+LAIGDFINIQ HAC+GGKS+GEDIRKLEHGVHVVSGTPGRVCDMIKR+TLRTRAIKL +LDE+DEM  R  +D I  V          + + PP           P +IL+MT    T+  RIL K
Sbjct:   19 LTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDV----------YRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVK 235          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: RH34_ORYSJ (DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 5.900e-78
Identity = 155/227 (68.28%), Postives = 178/227 (78.41%), Query Frame = 2
Query:  128 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLWVLDESDEMRSRRVRDPIICVPLSSTGSPGLFEFCPP-----------PPQILDMT----TNS*RILAK 763
            + FET+ GVE I+SFD MGI++DLLRGIY YGFEKPSAIQQRAV+PII GRDVIAQAQSGTGKTSMI+L+VCQ VDT+ REVQALILSPTRELA QTE+V+LAIGD+INIQ HAC+GGKS+GEDIRKLEHGVHVVSGTPGRVCDMIKR+TLRTRAIKL +LDE+DEM  R  +D I  V          + + PP           P +IL+MT    T+  RIL K
Sbjct:   19 LTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDV----------YRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVK 235          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 1.610e-67
Identity = 137/220 (62.27%), Postives = 170/220 (77.27%), Query Frame = 2
Query:  128 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLWVLDESDEMRSRRVRDPIICVPLSSTGSPGLFEFC----PPPPQILDMT----TNS*RILAK 763
            +VFETT+G++ I SFD MG+ D +LRG+Y YG++KPS IQQRA++PI+KGRDVIAQAQSGTGKTSMIA++VCQ V+ SSR+VQ L+LSP+RELA+QTEK I AIG   NIQAHAC+GGKS+GEDI+KLE GVH VSGTPGRV DMIKR +L+T+A+KL VLDESDEM S+ ++D I  V       P   + C      P +IL+MT    T+  RIL K
Sbjct:   10 LVFETTKGIKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDV---YRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVK 226          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.276e-64
Identity = 118/201 (58.71%), Postives = 159/201 (79.10%), Query Frame = 2
Query:  125 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLWVLDESDEMRSRRVRDPIICVPLSSTGSPGLFEFCPPPPQIL 727
            K+ FE++E V+  T+FDAMG+K+DLLRGIY Y FEKPSAIQQRA++PII+GRDVIAQAQSGTGKT+  ++++ Q++DT+ RE QAL+LSPTRELA Q + V+LA+GD++N+Q HAC+GG SVGEDIRKL++G H+VSGTPGRV DMI+R+ LRT+ IK+ +LDESDE+ +   +D I  V          + + PP  Q++
Sbjct:   11 KLAFESSEHVKVATTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIRRRHLRTKNIKMLILDESDELLNMGFKDQIYDV----------YRYLPPSTQVV 201          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.194e-62
Identity = 127/228 (55.70%), Postives = 166/228 (72.81%), Query Frame = 2
Query:  125 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLWVLDESDEMRSRRVRDPIICVPLSSTGSPGLFEFCPP-----------PPQILDMT----TNS*RILAK 763
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+LA+GD++N+Q HAC+GG +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+ VLDE+DEM ++  ++ I  V          + + PP           P +IL+MT    T+  RIL K
Sbjct:   29 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV----------YRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVK 246          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.194e-62
Identity = 127/228 (55.70%), Postives = 166/228 (72.81%), Query Frame = 2
Query:  125 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLWVLDESDEMRSRRVRDPIICVPLSSTGSPGLFEFCPP-----------PPQILDMT----TNS*RILAK 763
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+LA+GD++N+Q HAC+GG +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+ VLDE+DEM ++  ++ I  V          + + PP           P +IL+MT    T+  RIL K
Sbjct:   20 KIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV----------YRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVK 237          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.194e-62
Identity = 127/228 (55.70%), Postives = 166/228 (72.81%), Query Frame = 2
Query:  125 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLWVLDESDEMRSRRVRDPIICVPLSSTGSPGLFEFCPP-----------PPQILDMT----TNS*RILAK 763
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+LA+GD++N+Q HAC+GG +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+ VLDE+DEM ++  ++ I  V          + + PP           P +IL+MT    T+  RIL K
Sbjct:   29 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV----------YRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVK 246          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.661e-62
Identity = 126/228 (55.26%), Postives = 166/228 (72.81%), Query Frame = 2
Query:  125 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLWVLDESDEMRSRRVRDPIICVPLSSTGSPGLFEFCPP-----------PPQILDMT----TNS*RILAK 763
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+  +++V Q +D   RE QALIL+PTRELA Q +K +LA+GD++N+Q HAC+GG +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+ VLDE+DEM ++  ++ I  V          + + PP           P +IL+MT    T+  RIL K
Sbjct:   24 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV----------YRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK 241          
The following BLAST results are available for this feature:
BLAST of EY720866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_NICPL6.303e-8076.12Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
RH2_ARATH3.128e-7971.76DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
RH2_ORYSJ9.102e-7969.16DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
RH34_ORYSJ5.900e-7868.28DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sa... [more]
RH34_ARATH1.610e-6762.27DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop... [more]
FAL1_USTMA1.276e-6458.71ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
IF4A3_XENTR1.194e-6255.70Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
IF4A3_DANRE1.194e-6255.70Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]
I4A3A_XENLA1.194e-6255.70Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
IF4A3_TAEGU2.661e-6255.26Eukaryotic initiation factor 4A-III OS=Taeniopygia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-015-D09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720866 ID=EY720866; Name=EY720866; organism=Citrus sinensis; type=EST; length=802bp
CACGCGTCCGGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAATTGT
TGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAGAGGA
GGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGGAAGG
AGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGATCTGT
TGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACAACAG
AGGGCCGTTATGCCAATAATAAAGGGCCGTGATGTAATTGCACAGGCCCA
GTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAGACGG
TCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTACGAGG
GAGTTGGCGACGCAGACAGAGAAAGTGATTTTGGCAATTGGTGATTTTAT
TAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAAGATA
TTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGGTAGA
GTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTAAATT
ATGGGTGCTTGATGAGTCTGATGAGATGCGGAGCAGAAGGGTCAGGGATC
CAATTATATGTGTACCGCTATCCTCCACCGGATCTCCCGGGTTGTTCGAA
TTCTGCCCCCCTCCCCCCCAAATTTTGGATATGACAACCAATTCATGACG
GATCCTGGCAAAATCTCGGCAAGCGGTGAGAATTGACTTTGGGGGGGAGC
CC
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