EY720846

Overview
NameEY720846
Unique NameEY720846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720846 vs. ExPASy Swiss-Prot
Match: Y1051_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI1051 OS=Haemophilus influenzae GN=HI1051 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.285e-34
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 3
Query:    6 GRRGLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            GR+G DAHVGERGVKLSGGQRQRIAIARV+LKDAPIL+LDEATSALDSEVE AIQESL+ +M+ KTVIAIAHRLSTIA MDRL+VL
Sbjct:  491 GRKGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEVAIQESLDKMMENKTVIAIAHRLSTIAAMDRLIVL 576          
BLAST of EY720846 vs. ExPASy Swiss-Prot
Match: MSBA_ALHEH (Lipid A export ATP-binding/permease protein msbA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=msbA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.682e-26
Identity = 62/83 (74.70%), Postives = 68/83 (81.93%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            G D  +GE GV LSGGQRQRIAIAR LLKDAPILILDEATSALDSE E  IQE+LE LM+G+T + IAHRLSTI   DR+VVL
Sbjct:  474 GFDTVIGENGVMLSGGQRQRIAIARALLKDAPILILDEATSALDSESEKRIQEALEKLMRGRTTLVIAHRLSTIEDADRIVVL 556          
BLAST of EY720846 vs. ExPASy Swiss-Prot
Match: MSBA_RALSO (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia solanacearum GN=msbA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.893e-26
Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            G+D ++G+ G KLSGGQRQR+AIAR + KDAPILILDEATSALDSE E  +Q +LEALMQG+T + IAHRLSTI   DR+VVL
Sbjct:  478 GVDTNIGDNGSKLSGGQRQRLAIARAVYKDAPILILDEATSALDSESERQVQAALEALMQGRTTLVIAHRLSTIENADRIVVL 560          
BLAST of EY720846 vs. ExPASy Swiss-Prot
Match: MSBA_ALCBS (Lipid A export ATP-binding/permease protein msbA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=msbA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.390e-26
Identity = 59/83 (71.08%), Postives = 71/83 (85.54%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            GLD  +G+ GV+LSGGQRQRIAIAR LLKDAP+LILDEATSALDSE E  IQ++LE +MQG+T + IAHRLSTI + DR++VL
Sbjct:  468 GLDTLLGQDGVQLSGGQRQRIAIARALLKDAPVLILDEATSALDSESEHHIQQALEQVMQGRTTLVIAHRLSTIEKADRIMVL 550          
BLAST of EY720846 vs. ExPASy Swiss-Prot
Match: MSBA_THIDA (Lipid A export ATP-binding/permease protein msbA OS=Thiobacillus denitrificans (strain ATCC 25259) GN=msbA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.428e-25
Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            GLD  +GE G++LSGGQRQRIAIAR +LK+APILILDEATSALDSE E  +Q +LE LMQ +T + IAHRLSTI R +R+VVL
Sbjct:  466 GLDTLIGENGMRLSGGQRQRIAIARAILKNAPILILDEATSALDSESERHVQAALETLMQNRTTLVIAHRLSTIERANRIVVL 548          
BLAST of EY720846 vs. ExPASy Swiss-Prot
Match: MSBA_RALME (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=msbA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.172e-25
Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            GL+ ++G+ G+KLSGGQRQR+AIAR + KDAPILILDEATSALDSE E  +Q +LE+LM G+T + IAHRLSTI   DR+VVL
Sbjct:  479 GLETNIGDNGMKLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERQVQAALESLMVGRTTLVIAHRLSTIENADRIVVL 561          
BLAST of EY720846 vs. ExPASy Swiss-Prot
Match: MSBA_RALEJ (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia eutropha (strain JMP134) GN=msbA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.142e-25
Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            G++ ++G+ G+KLSGGQRQR+AIAR + KDAPILILDEATSALDSE E  +Q +LEALM G+T + IAHRLSTI   DR+VVL
Sbjct:  476 GVNTNIGDNGMKLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERQVQAALEALMVGRTTLVIAHRLSTIENADRIVVL 558          
BLAST of EY720846 vs. ExPASy Swiss-Prot
Match: MSBA_BURTA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=msbA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.142e-25
Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            G+D  VG+ G++LSGGQRQR+AIAR + KDAPILILDEATSALDSE E  +Q +LE LM+G+T + IAHRLSTI R DR++VL
Sbjct:  480 GIDTLVGDNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVL 562          
BLAST of EY720846 vs. ExPASy Swiss-Prot
Match: MSBA_BURPS (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia pseudomallei GN=msbA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.142e-25
Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            G+D  VG+ G++LSGGQRQR+AIAR + KDAPILILDEATSALDSE E  +Q +LE LM+G+T + IAHRLSTI R DR++VL
Sbjct:  480 GIDTLVGDNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVL 562          
BLAST of EY720846 vs. ExPASy Swiss-Prot
Match: MSBA_BURP1 (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia pseudomallei (strain 1710b) GN=msbA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.142e-25
Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            G+D  VG+ G++LSGGQRQR+AIAR + KDAPILILDEATSALDSE E  +Q +LE LM+G+T + IAHRLSTI R DR++VL
Sbjct:  480 GIDTLVGDNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVL 562          
The following BLAST results are available for this feature:
BLAST of EY720846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
Y1051_HAEIN1.285e-3486.05Uncharacterized ABC transporter ATP-binding protei... [more]
MSBA_ALHEH1.682e-2674.70Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_RALSO4.893e-2669.88Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ALCBS6.390e-2671.08Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_THIDA2.428e-2569.88Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_RALME3.172e-2567.47Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_RALEJ4.142e-2567.47Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURTA4.142e-2567.47Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURPS4.142e-2567.47Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURP14.142e-2567.47Lipid A export ATP-binding/permease protein msbA O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-015-B06-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720846 ID=EY720846; Name=EY720846; organism=Citrus sinensis; type=EST; length=264bp
GCGACGGCCGCCGCGGCCTGGACGCCCACGTCGGCGAGCGCGGCGTCAAG
CTGTCGGGCGGCCAGCGCCAGCGCATCGCCATCGCCCGCGTGCTGCTCAA
GGACGCGCCCATCCTGATCCTGGACGAGGCCACGTCGGCGCTCGACTCCG
AGGTCGAGGCCGCGATCCAGGAGAGCCTGGAGGCGCTGATGCAGGGCAAG
ACCGTCATCGCCATCGCGCACCGCCTGTCCACCATCGCCCGCATGGACCG
GCTGGTGGTGCTGG
back to top