FC922002

Overview
NameFC922002
Unique NameFC922002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length368
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7551 contig Csv1_Contig7551:34..397. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC922002 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.642e-42
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 3
Query:  117 AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 368
            AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNP NTVFDAKRLIGRRFSDPS
Sbjct:    2 AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDPS 85          
BLAST of FC922002 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.064e-41
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 3
Query:  117 AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 368
            AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD+ERLIGDAAKNQVAMNP NTVFDAKRLIGRRFSD S
Sbjct:    2 AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPVNTVFDAKRLIGRRFSDAS 85          
BLAST of FC922002 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.815e-41
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 3
Query:  123 KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 368
            KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFS P+
Sbjct:    3 KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSSPA 84          
BLAST of FC922002 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 2.370e-41
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 3
Query:  117 AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 368
            +GKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD+ERLIGDAAKNQVAMNP NTVFDAKRLIGRRFSD S
Sbjct:    2 SGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPVNTVFDAKRLIGRRFSDSS 85          
BLAST of FC922002 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.096e-41
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 3
Query:  117 AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 368
            AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD+ERLIGDAAKNQVAMNP NTVFDAKRLIGRRF+D S
Sbjct:    2 AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFTDSS 85          
BLAST of FC922002 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.096e-41
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 3
Query:  117 AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 368
            AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVA+NP NTVFDAKRLIGRRFSD S
Sbjct:    2 AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVALNPINTVFDAKRLIGRRFSDAS 85          
BLAST of FC922002 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.043e-41
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 3
Query:  117 AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 368
            AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYV FTD+ERLIGDAAKNQVAMNP NTVFDAKRLIGRRFSD S
Sbjct:    2 AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDAS 85          
BLAST of FC922002 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 3.423e-40
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 3
Query:  117 AGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 368
            AGKGEGPAIGIDLGTTYS VGVWQHDRVEIIANDQGNRTTPSYVAFTD+ERLIGDAAKNQVAMNP NTVFDAKRLIGRRFSD S
Sbjct:    2 AGKGEGPAIGIDLGTTYSRVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDAS 85          
BLAST of FC922002 vs. ExPASy Swiss-Prot
Match: HSP70_CHLRE (Heat shock 70 kDa protein OS=Chlamydomonas reinhardtii GN=HSP70 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.217e-37
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 3
Query:  129 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 365
            E PAIGIDLGTTYSCVGVWQ+DRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP +TVFDAKRLIGR+FSDP
Sbjct:    4 EAPAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRHTVFDAKRLIGRKFSDP 82          
BLAST of FC922002 vs. ExPASy Swiss-Prot
Match: HSP70_CHICK (Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.590e-37
Identity = 72/81 (88.89%), Postives = 79/81 (97.53%), Query Frame = 3
Query:  126 GEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 368
            G+GPAIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNT+FDAKRLIGR++ DP+
Sbjct:    3 GKGPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKYDDPT 83          
The following BLAST results are available for this feature:
BLAST of FC922002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7C_PETHY1.642e-4297.62Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP72_ARATH1.064e-4196.43Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP70_MAIZE1.815e-4197.56Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP71_ARATH2.370e-4195.24Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP73_ARATH3.096e-4195.24Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP71_SOLLC3.096e-4195.24Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP72_SOLLC4.043e-4195.24Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP7E_SPIOL3.423e-4095.24Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP70_CHLRE1.217e-3793.67Heat shock 70 kDa protein OS=Chlamydomonas reinhar... [more]
HSP70_CHICK1.590e-3788.89Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC06056D11T7 RindPdigS Citrus sinensis cDNA clone C06056D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922002 ID=FC922002; Name=FC922002; organism=Citrus sinensis; type=EST; length=368bp
CGCGGGGACGGAAACGGACTAACAATCAATAAGTAAACACTCAAGCTCGC
AAATCATCCGTGCTTTTTTTCTTTTTTTTTTTATTGTTGATAGATTCTTG
ATTTTGTTAATCGACGGCTGGAAAAGGCGAAGGTCCTGCTATTGGAATTG
ACTTGGGCACGACTTACTCTTGTGTCGGTGTCTGGCAACATGATCGAGTT
GAGATCATCGCTAATGATCAAGGTAACCGAACGACGCCGTCTTATGTGGC
GTTTACTGATACGGAGCGTTTGATCGGTGATGCTGCCAAGAACCAGGTCG
CCATGAACCCCACCAACACTGTTTTTGATGCTAAGCGTTTGATTGGGAGG
CGATTCAGTGATCCTTCA
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