FC922001

Overview
NameFC922001
Unique NameFC922001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC922001_ssr516 microsatellite FC922001_ssr516:516..527. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC922001 vs. ExPASy Swiss-Prot
Match: C79A1_SORBI (Tyrosine N-monooxygenase OS=Sorghum bicolor GN=CYP79A1 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25
Identity = 56/110 (50.91%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  389 IAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETEXXXXXXXXXXXXCMGMALGSEMSVVLLARLLQGFEWSAPSGEEKIDLSESKYDLLM 718
            IAGY +PKGSHV+LSR GLGRNP VW +PL+F P+RH+ +       V L E +            C+  +LG+ MSV+L  RLLQGF WS P+G E +DLSESK D  M
Sbjct:  430 IAGYRVPKGSHVILSRTGLGRNPRVWDEPLRFYPDRHLATAAS---DVALTENDLRFISFSTGRRGCIAASLGTAMSVMLFGRLLQGFTWSKPAGVEAVDLSESKSDTFM 536          
BLAST of FC922001 vs. ExPASy Swiss-Prot
Match: C79A2_ARATH (Phenylalanine N-hydroxylase OS=Arabidopsis thaliana GN=CYP79A2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.687e-24
Identity = 56/110 (50.91%), Postives = 74/110 (67.27%), Query Frame = 2
Query:  389 IAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETEXXXXXXXXXXXXCMGMALGSEMSVVLLARLLQGFEWSAPSGEEKIDLSESKYDLLM 718
            + GYFIPKGSHVL+SR+G+GRNP+VW  P KF PERH+ +    +  V+L E++            CMG+ +GS M+ +LLARL+QGF W    G+ KID+SESK DL M
Sbjct:  405 VDGYFIPKGSHVLISRMGIGRNPSVWDKPHKFDPERHLST----NTCVDLNESDLNIISFSAGRRGCMGVDIGSAMTYMLLARLIQGFTWLPVPGKNKIDISESKNDLFM 510          
BLAST of FC922001 vs. ExPASy Swiss-Prot
Match: C79B1_SINAL (Cytochrome P450 79B1 OS=Sinapis alba GN=CYP79B1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.474e-22
Identity = 52/110 (47.27%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  389 IAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETEXXXXXXXXXXXXCMGMALGSEMSVVLLARLLQGFEWSAPSGEEKIDLSESKYDLLM 718
            +AGY IPKGS VLLSR GLGRNP VW DPL F PERH+        +V L E +            C   ALG+ ++ +LLARLLQGF W  P  E +++L ES +D+ +
Sbjct:  416 VAGYHIPKGSQVLLSRYGLGRNPKVWADPLSFKPERHLNECS----EVTLTENDLRFISFSTGKRGCAAPALGTALTTMLLARLLQGFTWKLPENETRVELMESSHDMFL 521          
BLAST of FC922001 vs. ExPASy Swiss-Prot
Match: C79B2_ARATH (Tryptophan N-hydroxylase 1 OS=Arabidopsis thaliana GN=CYP79B2 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.602e-22
Identity = 51/110 (46.36%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  389 IAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETEXXXXXXXXXXXXCMGMALGSEMSVVLLARLLQGFEWSAPSGEEKIDLSESKYDLLM 718
            +AGY IPKGS VLLSR GLGRNP VW DPL F PERH+        +V L E +            C   ALG+ ++ ++LARLLQGF W  P  E +++L ES +D+ +
Sbjct:  415 VAGYHIPKGSQVLLSRYGLGRNPKVWADPLCFKPERHLNECS----EVTLTENDLRFISFSTGKRGCAAPALGTALTTMMLARLLQGFTWKLPENETRVELMESSHDMFL 520          
BLAST of FC922001 vs. ExPASy Swiss-Prot
Match: C79B3_ARATH (Tryptophan N-hydroxylase 2 OS=Arabidopsis thaliana GN=CYP79B3 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.248e-21
Identity = 50/110 (45.45%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  389 IAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETEXXXXXXXXXXXXCMGMALGSEMSVVLLARLLQGFEWSAPSGEEKIDLSESKYDLLM 718
            +AGY IPKGS VLLSR GLGRNP VW DPL F PERH+        +V L E +            C   ALG+ ++ ++LARLLQGF+W     E +++L ES +D+ +
Sbjct:  417 VAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECS----EVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSETRVELMESSHDMFL 522          
BLAST of FC922001 vs. ExPASy Swiss-Prot
Match: C79F1_ARATH (Dihomomethionine N-hydroxylase OS=Arabidopsis thaliana GN=CYP79F1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.526e-19
Identity = 50/110 (45.45%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  389 IAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETEXXXXXXXXXXXXCMGMALGSEMSVVLLARLLQGFEWSAPSGEEKIDLSESKYDLLM 718
            + GYFIPKGSH+ + R GLGRNP +WKDPL + PERH+   D    +V L ETE            C+G+ +G+ M V+LLAR LQGF W        + L E    LLM
Sbjct:  408 LGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYKPERHLQG-DGITKEVTLVETEMRFVSFSTGRRGCIGVKVGTIMMVMLLARFLQGFNWKLHQDFGPLSLEEDDASLLM 516          
BLAST of FC922001 vs. ExPASy Swiss-Prot
Match: C79F2_ARATH (Hexahomomethionine N-hydroxylase OS=Arabidopsis thaliana GN=CYP79F2 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19
Identity = 48/110 (43.64%), Postives = 62/110 (56.36%), Query Frame = 2
Query:  389 IAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETEXXXXXXXXXXXXCMGMALGSEMSVVLLARLLQGFEWSAPSGEEKIDLSESKYDLLM 718
            + GYFIPKGSH+ + R GLGRNP +WKDPL + PERH+   D    +V L ETE            C+G+ +G+ M  ++LAR LQGF W        + L E    LLM
Sbjct:  407 LGGYFIPKGSHIHVCRPGLGRNPKIWKDPLAYEPERHLQG-DGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMAMMLARFLQGFNWKLHRDFGPLSLEEDDASLLM 515          
BLAST of FC922001 vs. ExPASy Swiss-Prot
Match: F3PH_PETHY (Flavonoid 3'-monooxygenase OS=Petunia hybrida GN=CYP75B2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 37/106 (34.91%), Postives = 56/106 (52.83%), Query Frame = 2
Query:  389 IAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETEXXXXXXXXXXXXCMGMALGSEMSVVLLARLLQGFEWSAPSGE--EKIDLSES 700
            I GYFIPKGS +LL+   + R+PN W DPL+F PER +        +V++   +            C GM LG  M  +++A L+  F W   SG+  E +++ E+
Sbjct:  383 INGYFIPKGSTLLLNVWAIARDPNAWADPLEFRPERFLPG--GEKPKVDVRGNDFEVIPFGAGRRICAGMNLGIRMVQLMIATLIHAFNWDLVSGQLPEMLNMEEA 486          
The following BLAST results are available for this feature:
BLAST of FC922001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
C79A1_SORBI9.234e-2550.91Tyrosine N-monooxygenase OS=Sorghum bicolor GN=CYP... [more]
C79A2_ARATH2.687e-2450.91Phenylalanine N-hydroxylase OS=Arabidopsis thalian... [more]
C79B1_SINAL1.474e-2247.27Cytochrome P450 79B1 OS=Sinapis alba GN=CYP79B1 PE... [more]
C79B2_ARATH5.602e-2246.36Tryptophan N-hydroxylase 1 OS=Arabidopsis thaliana... [more]
C79B3_ARATH1.248e-2145.45Tryptophan N-hydroxylase 2 OS=Arabidopsis thaliana... [more]
C79F1_ARATH1.526e-1945.45Dihomomethionine N-hydroxylase OS=Arabidopsis thal... [more]
C79F2_ARATH7.571e-1943.64Hexahomomethionine N-hydroxylase OS=Arabidopsis th... [more]
F3PH_PETHY9.911e-1134.91Flavonoid 3'-monooxygenase OS=Petunia hybrida GN=C... [more]
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Properties
Property NameValue
Genbank descriptionC06056D09T7 RindPdigS Citrus sinensis cDNA clone C06056D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922001 ID=FC922001; Name=FC922001; organism=Citrus sinensis; type=EST; length=772bp
CGCGGGGACCTCGCTCAAGTCTCTCAAACTACTTGCTTTTCATTGCATTA
ATAGGAAAAGTTCTTTAATTTTCTGATTTGAAGAATATGGAAGCTGTTTT
TGCAGGTAAGAACCAATGGTCAGAGATGTTTGTTATGAAGGAGGGTGTTG
ATATTTGGCCGTATTGGGATAGTATTCTTGCTGATGAGATAAGAAATGAT
AATCTTGATCTTCTTGAAGTTCCTCAATACGGGCGAAACCTTAATGAGAC
TGGTTGATTGGCTAAATACGAGTTGCTTTATGTTGAGTAATGTTATGCTT
TCAAGAGTTTGTATTTCATAAACAAAGTGTGGATTATGTACCTGCCCGGG
CGGCCGCTCGAAGCGTGGTCGCGGCCGAGGTACGCGGGATCGCCGGTTAC
TTCATTCCCAAAGGCAGTCACGTTCTGCTGAGCCGAATAGGGCTTGGCCG
GAACCCTAACGTCTGGAAAGATCCATTGAAATTCATACCTGAACGTCATA
TTGGTTCAGTGGACGATCATCATCATCAAGTAGAGTTGGCGGAAACAGAA
TTAAGATTCCTTTCATTCAGCAGAGGAAGGCGCAGTTGCATGGGCATGGC
ACTTGGCTCTGAGATGTCTGTAGTGCTTTTGGCAAGGCTTCTTCAAGGGT
TTGAATGGAGCGCGCCATCGGGTGAGGAGAAGATTGACCTCTCCGAATCA
AAATACGACCTCCTTATGGCTAAACCATTGCCTGCACGTGCAAAGCCCCG
GTTGGCTGCTGAGTTGTACCTG
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