FC921997

Overview
NameFC921997
Unique NameFC921997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921997 vs. ExPASy Swiss-Prot
Match: GPAT6_ARATH (Glycerol-3-phosphate acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.310e-50
Identity = 97/113 (85.84%), Postives = 108/113 (95.58%), Query Frame = -3
Query:    3 KNGQSGVLFICNHRTVLDPVVTAVALGRKISCVTYSIGKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRVVPVAINTKQTVFH 341
            K GQ G L +CNHRTVLDPVVTAVALGRKISCVTYSI KF+E+ISPIKAVAL+R+REKDAA+IK+LLEEGDLVICPEGTTCREPFLLRFSALFAELTDR+VPVAINTKQ++F+
Sbjct:  301 KPGQPGHLLVCNHRTVLDPVVTAVALGRKISCVTYSISKFSELISPIKAVALTRQREKDAANIKRLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSMFN 413          

HSP 2 Score: 20.4014 bits (41), Expect = 2.310e-50
Identity = 11/35 (31.43%), Postives = 16/35 (45.71%), Query Frame = -2
Query:  385 NCPSRPPSVSYDGRSTVTWWVMSNIRPPPYLPGRP 489
            N P       Y+ + T    V++   PPP  PG+P
Sbjct:  271 NIPLPERIARYNYKLTGIKLVVNGHPPPPPKPGQP 305          
BLAST of FC921997 vs. ExPASy Swiss-Prot
Match: GPAT4_ARATH (Glycerol-3-phosphate acyltransferase 4 OS=Arabidopsis thaliana GN=GPAT4 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.493e-39
Identity = 74/111 (66.67%), Postives = 97/111 (87.39%), Query Frame = -3
Query:    3 GQSGVLFICNHRTVLDPVVTAVALGRKISCVTYSIGKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRVVPVAINTKQTVFH 335
            G+ G L++ NHRT LDP++ A+ALGRKI+CVTYS+ + + ++SPI AVAL+R+R  DAA ++QLLE+GDLVICPEGTTCREP+LLRFSALFAEL+DR+VPVA+N KQ +F+
Sbjct:  301 GKPGNLYVLNHRTALDPIIIAIALGRKITCVTYSVSRLSLMLSPIPAVALTRDRVADAARMRQLLEKGDLVICPEGTTCREPYLLRFSALFAELSDRIVPVAMNCKQGMFN 411          

HSP 2 Score: 21.1718 bits (43), Expect = 1.493e-39
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = -2
Query:  385 RPPPYLPGRP 414
            RPPP  PG+P
Sbjct:  294 RPPPPSPGKP 303          
BLAST of FC921997 vs. ExPASy Swiss-Prot
Match: GPAT5_ARATH (Glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=GPAT5 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.133e-37
Identity = 75/111 (67.57%), Postives = 90/111 (81.08%), Query Frame = -3
Query:    3 GQSGVLFICNHRTVLDPVVTAVALGRKISCVTYSIGKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRVVPVAINTKQTVFH 335
            G+SGVLF+C HRT++DPVV +  LGR I  VTYSI + +EI+SPI  V L+R R+ DAA IKQ L +GDLV+CPEGTTCREPFLLRFSALFAELTDR+VPVA+N +   FH
Sbjct:  290 GKSGVLFVCTHRTLMDPVVLSYVLGRSIPAVTYSISRLSEILSPIPTVRLTRIRDVDAAKIKQQLSKGDLVVCPEGTTCREPFLLRFSALFAELTDRIVPVAMNYRVGFFH 400          
BLAST of FC921997 vs. ExPASy Swiss-Prot
Match: GPAT8_ARATH (Probable glycerol-3-phosphate acyltransferase 8 OS=Arabidopsis thaliana GN=GPAT8 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.933e-37
Identity = 72/111 (64.86%), Postives = 95/111 (85.59%), Query Frame = -3
Query:    3 GQSGVLFICNHRTVLDPVVTAVALGRKISCVTYSIGKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRVVPVAINTKQTVFH 335
            G  G L++ NHRT LDP++ A+ALGRKI CVTYS+ + + ++SPI AVAL+R+R  DAA++++LLE+GDLVICPEGTTCRE +LLRFSALFAEL+DR+VPVA+N KQ +F+
Sbjct:  300 GTLGNLYVLNHRTALDPIIVAIALGRKICCVTYSVSRLSLMLSPIPAVALTRDRATDAANMRKLLEKGDLVICPEGTTCREEYLLRFSALFAELSDRIVPVAMNCKQGMFN 410          
BLAST of FC921997 vs. ExPASy Swiss-Prot
Match: GPAT1_ARATH (Glycerol-3-phosphate acyltransferase 1 OS=Arabidopsis thaliana GN=GPAT1 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.086e-35
Identity = 64/113 (56.64%), Postives = 93/113 (82.30%), Query Frame = -3
Query:    3 KNGQSGVLFICNHRTVLDPVVTAVALGRKISCVTYSIGKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRVVPVAINTKQTVFH 341
            + G SGVL++CNHRT+LDPV    +LG+ ++ VTYS+ KF+E I+P+K V+L R+R+KD   +++LL +GDLV+CPEGTTCREP+LLRFS LFAELT+ +VPVA++ + ++F+
Sbjct:  391 EKGNSGVLYVCNHRTLLDPVFLTTSLGKPLTAVTYSLSKFSEFIAPLKTVSLKRDRKKDGEAMQRLLSKGDLVVCPEGTTCREPYLLRFSPLFAELTEDIVPVAVDARVSMFY 503          
BLAST of FC921997 vs. ExPASy Swiss-Prot
Match: GPAT7_ARATH (Glycerol-3-phosphate acyltransferase 7 OS=Arabidopsis thaliana GN=GPAT7 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.772e-33
Identity = 69/111 (62.16%), Postives = 83/111 (74.77%), Query Frame = -3
Query:    3 GQSGVLFICNHRTVLDPVVTAVALGRKISCVTYSIGKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRVVPVAINTKQTVFH 335
            G  GVLF+C HRT++DPVV +  LGR I  VTYSI + +EI+SPI    L+R R+ DA  IK+ L  GDLV+ PEGTTCREPFLLRFSALFAELTD +VPVA+N +   FH
Sbjct:  288 GNPGVLFVCTHRTLMDPVVLSYVLGRSIPAVTYSISRLSEILSPIPTFRLTRIRDVDAEMIKKELSNGDLVVYPEGTTCREPFLLRFSALFAELTDNIVPVAMNYRVGFFH 398          
BLAST of FC921997 vs. ExPASy Swiss-Prot
Match: GPAT3_ARATH (Probable glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana GN=GPAT3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.904e-30
Identity = 62/111 (55.86%), Postives = 84/111 (75.68%), Query Frame = -3
Query:    3 QSGVLFICNHRTVLDPVVTAVALGRK-ISCVTYSIGKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRVVPVAINTKQTVFH 332
            + G LF+CNHRT+LDP+  A AL +K I  VTYS+ + +EI++PIK V L+R+R  D   +++LL EGDLV+CPEGTTCREP+LLRFS LF E++D +VPVA+    T F+
Sbjct:  325 RKGCLFVCNHRTLLDPLYVAFALRKKNIKTVTYSLSRVSEILAPIKTVRLTRDRVSDGQAMEKLLTEGDLVVCPEGTTCREPYLLRFSPLFTEVSDVIVPVAVTVHVTFFY 435          
BLAST of FC921997 vs. ExPASy Swiss-Prot
Match: GPAT2_ARATH (Probable glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=GPAT2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 60/109 (55.05%), Postives = 86/109 (78.90%), Query Frame = -3
Query:    3 GVLFICNHRTVLDPVVTAVALGRK-ISCVTYSIGKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRVVPVAINTKQTVFH 326
            G LF+CNHRT+LDP+  + AL +K +  VTYS+ + +E+++PIK V L+R+R KD   +++LL +GDLV+CPEGTTCREP+LLRFS LF+E+ D +VPVAI++  T F+
Sbjct:  332 GCLFVCNHRTLLDPLYISYALRKKNMKAVTYSLSRLSELLAPIKTVRLTRDRVKDGQAMEKLLSQGDLVVCPEGTTCREPYLLRFSPLFSEVCDVIVPVAIDSHVTFFY 440          
The following BLAST results are available for this feature:
BLAST of FC921997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GPAT6_ARATH2.310e-5085.84Glycerol-3-phosphate acyltransferase 6 OS=Arabidop... [more]
GPAT4_ARATH1.493e-3966.67Glycerol-3-phosphate acyltransferase 4 OS=Arabidop... [more]
GPAT5_ARATH1.133e-3767.57Glycerol-3-phosphate acyltransferase 5 OS=Arabidop... [more]
GPAT8_ARATH1.933e-3764.86Probable glycerol-3-phosphate acyltransferase 8 OS... [more]
GPAT1_ARATH3.086e-3556.64Glycerol-3-phosphate acyltransferase 1 OS=Arabidop... [more]
GPAT7_ARATH3.772e-3362.16Glycerol-3-phosphate acyltransferase 7 OS=Arabidop... [more]
GPAT3_ARATH3.904e-3055.86Probable glycerol-3-phosphate acyltransferase 3 OS... [more]
GPAT2_ARATH8.697e-3055.05Probable glycerol-3-phosphate acyltransferase 2 OS... [more]
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Properties
Property NameValue
Genbank descriptionC06056D05T7 RindPdigS Citrus sinensis cDNA clone C06056D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921997 ID=FC921997; Name=FC921997; organism=Citrus sinensis; type=EST; length=733bp
CCATGAAACACAGTTTGCTTAGTGTTGATAGCAACCGGCACAACTCTATC
TGTAAGCTCAGCAAAAAGTGCACTGAATCGTAAAAGAAAAGGCTCCCTGC
AGGTTGTTCCCTCGGGGCAGATCACCAAGTCACCTTCTTCAAGCAATTGC
TTGATGTGAGCTGCATCTTTCTCTCTTTCCCTTGACAAGGCAACAGCTTT
AATGGGTGAAATTATTTCAGTGAACTTGCCAATACTATATGTGACACAAC
TAATTTTTCGTCCTAGGGCAACGGCTGTGACCACAGGGTCTAAAACAGTG
CGATGGTTGCATATAAAAAGGACACCACTTTGGCCATTTTTGGGTGCTGG
TGGTGGGGTACCTCGGCCGCGACCACGCTTCGAGCGGCCGCCCGGGCAGG
TACGGTGGCGGCCGGATATTTGACATCACCCACCAGGTCACGGTTGACCT
GCCGTCGTATGACACCGAGGGCGGGCGGCTCGGGCAGTTTTTAAGGCTGC
CCGTTAGCATGAAGAACGGGTCCTTCTGTAACATATCGGAGATGAAGTTC
ACGACGCATACGGGAACCCACGTCGACGCTCCTGGCCACTTCTTTGATCA
CTACTTCGATGCTGGCTTTGATGCTGATTCTCTTGACTTGGATGTCTTAA
ACGGTCCTGGACTGTTAGTTGATGTTCCACGAGATAAGAACTTAACTGCT
GAAGTCTTGGAGTCCTTGAATATTCCCAAGGGG
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