FC921996
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3) HSP 1 Score: 101.293 bits (251), Expect = 1.612e-21 Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 2 Query: 2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKV---GKKVFAYSRP 238 +EFR+ +R AVEA+Y DMAARHR+RF SI ILKVVE+E + +RR Y+KQLL LKFPLPHR G V GKKVFA RP Sbjct: 91 KEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRP 172
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 4.690e-21 Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 2 Query: 2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238 +E R++SR AVE LYQDMAARHR+RF SIHILKV EIE ++R Y+KQ L KDLKFPLPHR + K F+Y RP Sbjct: 92 KEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRV--QKSTKTFSYKRP 168
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.980e-12 Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 2 Query: 2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238 RE+R+++ + AV Y+DM ARHR+R SIHI+KV EI N RRP IKQ +KFPLPHR + F RP Sbjct: 95 REYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQEIAAN-KCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRP 172
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 4.400e-11 Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 2 Query: 2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238 RE+R+++ AV Y+DM ARHR+R SI I+KV EI + RRP +KQ +KFPLPHR + K F RP Sbjct: 95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAS-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRP 172
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.400e-11 Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 2 Query: 2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238 RE+R+++ AV Y+DM ARHR+R SI I+KV EI + RRP +KQ +KFPLPHR + K F RP Sbjct: 95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAS-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRP 172
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.746e-11 Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 2 Query: 2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238 RE+R+++ AV Y+DM ARHR+R SI I+KV EI RRP +KQ +KFPLPHR + K F RP Sbjct: 95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAG-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRP 172
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.746e-11 Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 2 Query: 2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238 RE+R+++ AV Y+DM ARHR+R SI I+KV EI RRP +KQ +KFPLPHR + K F RP Sbjct: 95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAG-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRP 172
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.802e-11 Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 2 Query: 2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238 RE+R+++ + AV Y+DM ARHR+R +I I+KV I N RRP IKQ +KFPLPHR + K F RP Sbjct: 95 REYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAAN-KCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRP 172 The following BLAST results are available for this feature:
BLAST of FC921996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921996 ID=FC921996; Name=FC921996; organism=Citrus sinensis; type=EST; length=239bpback to top |