FC921996

Overview
NameFC921996
Unique NameFC921996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length239
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13549 contig Csv1_Contig13549:2..240. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.612e-21
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKV---GKKVFAYSRP 238
            +EFR+ +R  AVEA+Y DMAARHR+RF SI ILKVVE+E  + +RR Y+KQLL   LKFPLPHR  G V   GKKVFA  RP
Sbjct:   91 KEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRP 172          
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.690e-21
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 2
Query:    2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238
            +E R++SR  AVE LYQDMAARHR+RF SIHILKV EIE    ++R Y+KQ L KDLKFPLPHR   +   K F+Y RP
Sbjct:   92 KEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRV--QKSTKTFSYKRP 168          
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.980e-12
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 2
Query:    2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238
            RE+R+++ + AV   Y+DM ARHR+R  SIHI+KV EI  N   RRP IKQ     +KFPLPHR   +     F   RP
Sbjct:   95 REYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQEIAAN-KCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRP 172          
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.400e-11
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 2
Query:    2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238
            RE+R+++   AV   Y+DM ARHR+R  SI I+KV EI  +   RRP +KQ     +KFPLPHR   +  K  F   RP
Sbjct:   95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAS-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRP 172          
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.400e-11
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 2
Query:    2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238
            RE+R+++   AV   Y+DM ARHR+R  SI I+KV EI  +   RRP +KQ     +KFPLPHR   +  K  F   RP
Sbjct:   95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAS-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRP 172          
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.746e-11
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 2
Query:    2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238
            RE+R+++   AV   Y+DM ARHR+R  SI I+KV EI      RRP +KQ     +KFPLPHR   +  K  F   RP
Sbjct:   95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAG-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRP 172          
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.746e-11
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 2
Query:    2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238
            RE+R+++   AV   Y+DM ARHR+R  SI I+KV EI      RRP +KQ     +KFPLPHR   +  K  F   RP
Sbjct:   95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAG-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRP 172          
BLAST of FC921996 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.802e-11
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 2
Query:    2 REFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIEHNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRP 238
            RE+R+++ + AV   Y+DM ARHR+R  +I I+KV  I  N   RRP IKQ     +KFPLPHR   +  K  F   RP
Sbjct:   95 REYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAAN-KCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRP 172          
The following BLAST results are available for this feature:
BLAST of FC921996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RL20_SCHPO1.612e-2163.4160S ribosomal protein L20 OS=Schizosaccharomyces p... [more]
RL20_YEAST4.690e-2162.0360S ribosomal protein L20 OS=Saccharomyces cerevis... [more]
RL18A_SALSA3.980e-1248.1060S ribosomal protein L18a OS=Salmo salar GN=rpl18... [more]
RL18A_HUMAN4.400e-1145.5760S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_BOVIN4.400e-1145.5760S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]
RL18A_RAT5.746e-1145.5760S ribosomal protein L18a OS=Rattus norvegicus GN... [more]
RL18A_MOUSE5.746e-1145.5760S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]
RL18A_DANRE9.802e-1145.5760S ribosomal protein L18a OS=Danio rerio GN=rpl18... [more]
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Properties
Property NameValue
Genbank descriptionC06056D04T7 RindPdigS Citrus sinensis cDNA clone C06056D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921996 ID=FC921996; Name=FC921996; organism=Citrus sinensis; type=EST; length=239bp
CAGGGAGTTCCGTGAGATGAGCCGCACCGACGCTGTTGAGGCTCTCTACC
AGGACATGGCTGCCCGTCACCGCTCCCGTTTCGGTTCCATCCACATCCTC
AAGGTTGTTGAGATCGAGCACAACGACAGCATCCGCCGCCCCTACATCAA
GCAGCTCCTCCAGAAGGACCTCAAGTTCCCTCTGCCCCACCGTGCCGGTG
GCAAGGTCGGCAAGAAGGTCTTCGCCTACTCTCGCCCCT
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