FC921988

Overview
NameFC921988
Unique NameFC921988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length385
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6859 contig Csv1_Contig6859:2..386. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921988 vs. ExPASy Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.981e-19
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -3
Query:   63 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYLICSFPGHCLGGQKLAINV 368
            T + VGD  GW++  +    YS WA+++TF VGD+LVFN+ AG H V  V +S + +C + + +S  +    ++ L  +G HY IC  PGH  GG KL+I V
Sbjct:   25 TVYTVGDTSGWVIGGD----YSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSIKV 122          
BLAST of FC921988 vs. ExPASy Swiss-Prot
Match: UMEC_ARMRU (Umecyanin OS=Armoracia rusticana PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = -3
Query:   63 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYLICSFPGHCLGGQKLAINV 356
            VG  + W   P+ P  Y  WA  +TF VGD L F+FAAG HDV  VT+ +F+ C   +P+S  T  P  + L  +GP Y IC+   HC  GQKL+INV
Sbjct:    5 VGGDMEW-KRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 101          
BLAST of FC921988 vs. ExPASy Swiss-Prot
Match: BCB1_ARATH (Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.832e-19
Identity = 44/98 (44.90%), Postives = 57/98 (58.16%), Query Frame = -3
Query:   63 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYLICSFPGHCLGGQKLAINV 356
            VGD   W  P + P  Y+ WA  +TF VGD L F+FAAG HDV  V++++F  C    P+S  T  P  + L  +GP Y IC+   HC  GQKL+I V
Sbjct:   27 VGDDTEWTRPMD-PEFYTTWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCEKEKPISHMTVPPVKIMLNTTGPQYFICTVGDHCRFGQKLSITV 123          
BLAST of FC921988 vs. ExPASy Swiss-Prot
Match: CPC_CUCSA (Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.284e-18
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = -3
Query:   63 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNAC---NTTSPLSRTTNSPASVTLTASGPHYLICSFPGHCLGGQKLAINV 368
            T H+VGD  GW VP + P  YS WAA +TF VGD+L FNF A  H+V  + T+ SF+AC   N+ + + RT  SP    L   G HY +C+   HC  GQKL+INV
Sbjct:    3 TVHIVGDNTGWSVP-SSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERT--SPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 105          
BLAST of FC921988 vs. ExPASy Swiss-Prot
Match: STEL_RHUVE (Stellacyanin OS=Rhus vernicifera PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.420e-17
Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = -3
Query:   63 TRHVVGDALGWIVPPNGPATYS-NWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYLICSFPGHCLGGQKLAINV 368
            T + VGD+ GW VP  G   Y   WA+N+TF +GD LVF +    H+V +VTQ ++ +CN T+P++        + L   G  Y IC  P HC  GQK+ INV
Sbjct:    1 TVYTVGDSAGWKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCNDTTPIASYNTGBBRINLKTVGQKYYICGVPKHCDLGQKVHINV 103          
BLAST of FC921988 vs. ExPASy Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = -3
Query:   63 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYLICSFPGHCLGGQKLAINV 368
            T H VGD+ GW      P  Y+ WA++  F VGD+L+FN+    H+V +V Q  F +CN++SP +  T+   S+ L   G  Y +C  PGHC  GQK+ I V
Sbjct:    2 TVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 101          
BLAST of FC921988 vs. ExPASy Swiss-Prot
Match: ENL1_ARATH (Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = -3
Query:   63 VVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYLICSFPGHCLGGQKLAINV 359
            V G +  W +PP+   +++ WA    F VGD +VF + +G   V  VT+ ++N+CNTT+PL+  T+    V L  SGP Y I    GHC  GQKL++ V
Sbjct:   33 VGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEAYNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVV 131          
BLAST of FC921988 vs. ExPASy Swiss-Prot
Match: ENL2_ARATH (Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.375e-12
Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = -3
Query:   63 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYLICSFPGHCLGGQKLAINV 356
            VG +  W+  P  P  Y +W+    F V DTL F++A G   V  V ++ ++ACNT +P+ R  +  + ++L   GP Y I     +C  GQKL + V
Sbjct:   33 VGGSGAWVTNP--PENYESWSGKNRFLVHDTLYFSYAKGADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKLNVVV 128          
BLAST of FC921988 vs. ExPASy Swiss-Prot
Match: BABL_LILLO (Chemocyanin OS=Lilium longiflorum PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.796e-12
Identity = 38/98 (38.78%), Postives = 49/98 (50.00%), Query Frame = -3
Query:   69 HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYLICSFPGHCLGGQKLAI 362
            + VGD  GW    +G      W A +TF  GD LVF +    H+V  V    + +C T SP SR   S       + G +Y ICS PGHC GG K+A+
Sbjct:   33 YTVGDGGGWTFGTSG------WPAGKTFRAGDVLVFKYNPAVHNVVSVPAGGYKSC-TASPGSRVFKSGDDRITLSRGTNYFICSVPGHCQGGLKIAV 123          
BLAST of FC921988 vs. ExPASy Swiss-Prot
Match: ENL3_ARATH (Early nodulin-like protein 3 OS=Arabidopsis thaliana GN=At5g25090 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.226e-12
Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = -3
Query:   63 VVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYLICSFPGHCLGGQKLAINV 359
            V G    W +P +   + + WA +  F VGDTLV+ +      V +VT+ ++  CNTT+P +  +N    V L  SGP++ I     +C+ G+KL I V
Sbjct:   28 VGGKTSSWKIPSSPSESLNKWAESLRFRVGDTLVWKYDEEKDSVLQVTKDAYINCNTTNPAANYSNGDTKVKLERSGPYFFISGSKSNCVEGEKLHIVV 126          
The following BLAST results are available for this feature:
BLAST of FC921988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
BCP_PEA1.981e-1941.18Blue copper protein OS=Pisum sativum PE=2 SV=1[more]
UMEC_ARMRU3.379e-1945.92Umecyanin OS=Armoracia rusticana PE=1 SV=1[more]
BCB1_ARATH9.832e-1944.90Blue copper protein OS=Arabidopsis thaliana GN=BCB... [more]
CPC_CUCSA1.284e-1848.11Cucumber peeling cupredoxin OS=Cucumis sativus PE=... [more]
STEL_RHUVE1.420e-1741.75Stellacyanin OS=Rhus vernicifera PE=1 SV=1[more]
MAVI_CUCPE2.422e-1741.18Mavicyanin OS=Cucurbita pepo PE=1 SV=1[more]
ENL1_ARATH2.422e-1740.40Early nodulin-like protein 1 OS=Arabidopsis thalia... [more]
ENL2_ARATH1.375e-1234.69Early nodulin-like protein 2 OS=Arabidopsis thalia... [more]
BABL_LILLO1.796e-1238.78Chemocyanin OS=Lilium longiflorum PE=1 SV=1[more]
ENL3_ARATH5.226e-1234.34Early nodulin-like protein 3 OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06056C06T7 RindPdigS Citrus sinensis cDNA clone C06056C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921988 ID=FC921988; Name=FC921988; organism=Citrus sinensis; type=EST; length=385bp
CTACCGCTGGGCTGAGGGGCCGGAGAAGAAGGTTGAGGAGCACGAGAAGA
TCCCCTGGCGCTAACGTTGATGGCTAATTTCTGACCGCCGAGGCAGTGGC
CTGGAAATGAACAAATCAAGTAGTGTGGCCCAGAAGCTGTAAGAGTAACA
CTCGCAGGGCTATTTGTGGTTCTGGATAGGGGACTAGTGGTGTTGCATGC
ATTGAATGATGATTGTGTTACTCGAGTAACATCATGGTTTCCAGCGGCAA
AGTTAAACACAAGAGTGTCACCGACGGTGAAGGTCTGGTTTGCAGCCCAG
TTAGAGTAAGTAGCAGGACCATTAGGAGGAACAATCCAGCCTAGTGCATC
ACCCACCACATGCCTTGTCTGTGCCGTCGAGCTCT
back to top