FC921986

Overview
NameFC921986
Unique NameFC921986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10240 contig Csv1_Contig10240:1045..1466. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921986 vs. ExPASy Swiss-Prot
Match: TPT2_BRAOB (Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.563e-52
Identity = 93/123 (75.61%), Postives = 111/123 (90.24%), Query Frame = -3
Query:   50 MASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTQAVGNCVKRVAVIVSSVMFFRTPVS 418
            MASNLTNQSRNVLSKKVMV K+++LDNITLFSIIT+MS  LM PVT   EG+ FTP+Y+QSAG+N++++Y +SLIAA+C+HAYQQVSYMIL RVSPVT +VGNCVKRV VIVSSV+FF+TPVS
Sbjct:  250 MASNLTNQSRNVLSKKVMVKKDDSLDNITLFSIITLMSLFLMAPVTFFSEGIKFTPSYIQSAGVNVQQIYTKSLIAALCFHAYQQVSYMILARVSPVTHSVGNCVKRVVVIVSSVIFFKTPVS 372          

HSP 2 Score: 32.3426 bits (72), Expect = 2.563e-52
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -1
Query:    1 INAFGTGIALAGVFL 45
            +NAFGTGIALAGVFL
Sbjct:  374 VNAFGTGIALAGVFL 388          
BLAST of FC921986 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.226e-17
Identity = 47/129 (36.43%), Postives = 79/129 (61.24%), Query Frame = -3
Query:   35 MASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIA-AICYHAYQQVSYMILQRVSPVTQAVGNCVKRVAVIVSSVMFFRTPVSAYQCL 418
            M SNL    RN+ SKK M  K +++  +  ++ ++++S +++ P  + +EG        Q+A   +   +V  ++A ++ YH Y QVSYM L ++SP+T +VGN +KR++VIVSS++ FRTPV     L
Sbjct:  245 MISNLAFVFRNIFSKKGM--KGKSVSGMNYYACLSMLSLLILTPFAIAVEGPQMWVDGWQTALATVGPQFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSVGNTMKRISVIVSSIIIFRTPVQPVNAL 371          

HSP 2 Score: 21.557 bits (44), Expect = 9.226e-17
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = -1
Query:    1 INAFGTGIALAGVFL 45
            +NA G  IA+ G FL
Sbjct:  368 VNALGAAIAILGTFL 382          
BLAST of FC921986 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.769e-16
Identity = 44/129 (34.11%), Postives = 79/129 (61.24%), Query Frame = -3
Query:   35 MASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIA-AICYHAYQQVSYMILQRVSPVTQAVGNCVKRVAVIVSSVMFFRTPVSAYQCL 418
            M SNL    RN+ SKK M  K +++  +  ++ +++MS +++ P ++ +E      A  Q+A   +   +V  ++A ++ YH Y QVSYM L ++SP+T ++GN +KR++VIV+S++ F TP+     L
Sbjct:  245 MISNLAFVFRNIFSKKGM--KGKSVSGMNYYACLSMMSLVILTPFSIAVEVPQMWAAGWQNAVSQVGPNFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVASIIIFHTPIQPVNAL 371          

HSP 2 Score: 21.1718 bits (43), Expect = 9.769e-16
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = -1
Query:    1 INAFGTGIALAGVFL 45
            +NA G  IA+ G FL
Sbjct:  368 VNALGAAIAIFGTFL 382          
BLAST of FC921986 vs. ExPASy Swiss-Prot
Match: TPT_PEA (Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-12
Identity = 44/125 (35.20%), Postives = 71/125 (56.80%), Query Frame = -3
Query:   50 MASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEV-YVRSLI-AAICYHAYQQVSYMILQRVSPVTQAVGNCVKRVAVIVSSVMFFRTPVS 418
            M SN++   R++ SKK M +    +D+  +++ I++++ I+ IP  LI+EG T        A   +  V +V  L    + YH Y QV+   L+RV+P+T AVGN +KRV VI  S++ F   +S
Sbjct:  248 MISNISFTYRSIYSKKAMTD----MDSTNIYAYISIIALIVCIPPALIIEGPTLLKTGFNDAIAKVGLVKFVSDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKIS 368          

HSP 2 Score: 21.1718 bits (43), Expect = 1.930e-12
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = -1
Query:    1 GTGIALAGVFL 33
            GTGIA+AGV L
Sbjct:  374 GTGIAIAGVAL 384          
BLAST of FC921986 vs. ExPASy Swiss-Prot
Match: TPT_MAIZE (Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 42/129 (32.56%), Postives = 71/129 (55.04%), Query Frame = -3
Query:   50 MASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQS------AGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTQAVGNCVKRVAVIVSSVMFFRTPVS 418
            M SN++   R++ SKK M +    +D+  +++ I++++ I+ IP  LI EG    P  +Q       A + L +      +  + YH Y Q++   L+RV+P+T AVGN +KRV VI  S++ F   +S
Sbjct:  256 MISNISFTYRSIYSKKAMTD----MDSTNVYAYISIIALIVCIPPALIFEG----PKLMQHGFSDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKIS 376          
The following BLAST results are available for this feature:
BLAST of FC921986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TPT2_BRAOB2.563e-5275.61Triose phosphate/phosphate translocator, non-green... [more]
GPT1_ARATH9.226e-1736.43Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
GPT2_ARATH9.769e-1634.11Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
TPT_PEA1.930e-1235.20Triose phosphate/phosphate translocator, chloropla... [more]
TPT_MAIZE1.949e-1132.56Triose phosphate/phosphate translocator, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionC06056C04T7 RindPdigS Citrus sinensis cDNA clone C06056C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921986 ID=FC921986; Name=FC921986; organism=Citrus sinensis; type=EST; length=423bp
CAGGAAAACTCCAGCAAGAGCGATCCCAGTGCCAAAGGCATTGATACGCC
GAGACTGGAGTTCGGAAGAACATAACAGAGCTCACGATGACCGCCACCCT
CTTCACACAATTGCCTACTGCCTGGGTAACAGGGCTTACCCTCTGTAATA
TCATGTAAGAGACCTGCTGATAAGCATGGTAACAGATTGCAGCGATAAGT
GACCTTACATAAACCTCTTTAAGATTCAAACCAGCAGACTGTAGGTATGC
AGGGGTAAATGTGACACCTTCCATAATGAGAGTCACGGGGATCATCAGGA
TGAAAGACATGACTGTTATTATAGAAAATAGGGTGATATTGTCCAAAGCT
TCCTCTTTATTCACCATGACTTTTTTGCTAAGGACATTACGAGATTGGTT
TGTCAAATTGGAAGCCATCCCGC
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