FC921984

Overview
NameFC921984
Unique NameFC921984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length215
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:861..1075. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921984 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.592e-21
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = -1
Query:   51 RLVREELGTNFLTGEKVTSPGEKFDKVFTAMWQGKIIDPMLECLREWNGAPLPIC 215
            R VREELGT  LTGEKVTSPGE+FDKVFTA+ +GKIIDPM+ECL EWNGAP+PIC
Sbjct:  671 RFVREELGTELLTGEKVTSPGEEFDKVFTAICEGKIIDPMMECLNEWNGAPIPIC 725          
BLAST of FC921984 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.548e-21
Identity = 43/55 (78.18%), Postives = 52/55 (94.55%), Query Frame = -1
Query:   51 RLVREELGTNFLTGEKVTSPGEKFDKVFTAMWQGKIIDPMLECLREWNGAPLPIC 215
            ++VRE++GT+ LTGEKV SPGE+FDKVFTAM +GK+IDPMLECL+EWNGAPLPIC
Sbjct:  666 KIVREDIGTSLLTGEKVRSPGEEFDKVFTAMCEGKLIDPMLECLKEWNGAPLPIC 720          
BLAST of FC921984 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.903e-21
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = -1
Query:   51 RLVREELGTNFLTGEKVTSPGEKFDKVFTAMWQGKIIDPMLECLREWNGAPLPIC 215
            + VREELGT  LTGEKV SPGE+FDKVFTAM QGKIIDPMLECL EWNG+PLPIC
Sbjct:  661 KFVREELGTVLLTGEKVQSPGEEFDKVFTAMCQGKIIDPMLECLGEWNGSPLPIC 715          
BLAST of FC921984 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.032e-20
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = -1
Query:   51 RLVREELGTNFLTGEKVTSPGEKFDKVFTAMWQGKIIDPMLECLREWNGAPLPIC 215
            R VREELGT  LTGEKV SPGE+FDKVFTAM +GK+IDP+++CL+EWNGAP+PIC
Sbjct:  663 RFVREELGTKLLTGEKVVSPGEEFDKVFTAMCEGKLIDPLMDCLKEWNGAPIPIC 717          
BLAST of FC921984 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.299e-20
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = -1
Query:   51 RLVREELGTNFLTGEKVTSPGEKFDKVFTAMWQGKIIDPMLECLREWNGAPLPIC 215
            + VREELGT  LTGEKV SPGE+FDK+FTA+ QGKIIDP+LECL EWNGAPLPIC
Sbjct:  452 KFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 506          
BLAST of FC921984 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.690e-20
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = -1
Query:   51 RLVREELGTNFLTGEKVTSPGEKFDKVFTAMWQGKIIDPMLECLREWNGAPLPIC 215
            + VREEL T+ LTGEKV SPGE+FDKVF+A+ QGK+IDP+LECLREWNGAP+PIC
Sbjct:  566 KFVREELKTSLLTGEKVRSPGEEFDKVFSAICQGKVIDPLLECLREWNGAPIPIC 620          
BLAST of FC921984 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.690e-20
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = -1
Query:   51 RLVREELGTNFLTGEKVTSPGEKFDKVFTAMWQGKIIDPMLECLREWNGAPLPIC 215
            + VREELGT+ LTGEKV SPGE+ DKVF+AM QGKIIDP+LECL EWNGAPLPIC
Sbjct:  658 KFVREELGTSLLTGEKVISPGEECDKVFSAMCQGKIIDPLLECLGEWNGAPLPIC 712          
BLAST of FC921984 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.738e-20
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = -1
Query:   51 RLVREELGTNFLTGEKVTSPGEKFDKVFTAMWQGKIIDPMLECLREWNGAPLPIC 215
            + VREELGT+ LTGEKV SPGE+FDKVFTA+  GK+IDP+LECL+EW+GAPLPIC
Sbjct:  656 KFVREELGTSLLTGEKVKSPGEEFDKVFTAICAGKLIDPLLECLKEWDGAPLPIC 710          
BLAST of FC921984 vs. ExPASy Swiss-Prot
Match: PAL1_POPKI (Phenylalanine ammonia-lyase G1 OS=Populus kitakamiensis GN=PALG1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.738e-20
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = -1
Query:   51 RLVREELGTNFLTGEKVTSPGEKFDKVFTAMWQGKIIDPMLECLREWNGAPLPIC 215
            + VREELGT+ LTGEKV SPGE FDKVFTA+  GK++DP+LECL+EWNGAPLPIC
Sbjct:  628 KFVREELGTSLLTGEKVKSPGEDFDKVFTAICAGKLMDPLLECLKEWNGAPLPIC 682          
BLAST of FC921984 vs. ExPASy Swiss-Prot
Match: PALY_VITVI (Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.141e-19
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = -1
Query:   51 RLVREELGTNFLTGEKVTSPGEKFDKVFTAMWQGKIIDPMLECLREWNGAPLPIC 215
            + VREELGT  LTGEKV SPGE FDKVFTAM +GKIIDP+L+CL  WNGAPLPIC
Sbjct:  362 KFVREELGTGLLTGEKVRSPGEDFDKVFTAMCEGKIIDPLLDCLSAWNGAPLPIC 416          
The following BLAST results are available for this feature:
BLAST of FC921984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PAL1_ARATH1.592e-2181.82Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]
PALY_CITLI3.548e-2178.18Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PALY_POPTR7.903e-2183.64Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PAL2_ARATH1.032e-2076.36Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]
PAL1_PHAVU2.299e-2080.00Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]
PALY_PERAE6.690e-2076.36Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PAL2_PHAVU6.690e-2080.00Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]
PAL2_POPKI8.738e-2076.36Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PAL1_POPKI8.738e-2076.36Phenylalanine ammonia-lyase G1 OS=Populus kitakami... [more]
PALY_VITVI1.141e-1978.18Phenylalanine ammonia-lyase (Fragment) OS=Vitis vi... [more]

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Properties
Property NameValue
Genbank descriptionC06056C02T7 RindPdigS Citrus sinensis cDNA clone C06056C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921984 ID=FC921984; Name=FC921984; organism=Citrus sinensis; type=EST; length=215bp
CCATTTAGTCACATCGGCAATTCAATGAATTCTTAAGAATAAAACAACTA
GCATATTGGAAGAGGGGCGCCATTCCATTCCCTGAGACATTCCAGCATTG
GATCAATGATCTTGCCCTGCCACATTGCTGTAAACACTTTGTCAAATTTC
TCGCCGGGCGATGTAACTTTTTCCCCAGTCAGAAAATTAGTCCCGAGCTC
CTCCCTCACTAACCT
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