FC921983

Overview
NameFC921983
Unique NameFC921983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length257
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8110 contig Csv1_Contig8110:513..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.531e-27
Identity = 58/85 (68.24%), Postives = 64/85 (75.29%), Query Frame = 2
Query:    2 HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            +DG+ TYGGYSDIMVADEHF+VRIP+  PLD  APLLCAGIT YSPLR++GLDKPGM               KFAKAMGVKVTVI
Sbjct:  127 YDGSTTYGGYSDIMVADEHFIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVI 211          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.290e-25
Identity = 54/85 (63.53%), Postives = 62/85 (72.94%), Query Frame = 2
Query:    2 HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            +D TITYGGYSD MV +E FV+RIP+  PLDA APLLCAGITVYSP++++GLDKPGM               KFAKAMG KVTVI
Sbjct:  125 YDNTITYGGYSDHMVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVKFAKAMGTKVTVI 209          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.585e-24
Identity = 54/84 (64.29%), Postives = 60/84 (71.43%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DGTI  GGYSDIMVADEHF++R PE  PLDA APLLCAGIT YSPL+++GLDKPG+               KFAKA G KVTVI
Sbjct:  130 DGTIARGGYSDIMVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKPGLRVGVNGLGGLGHVAVKFAKAFGTKVTVI 213          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.022e-24
Identity = 52/85 (61.18%), Postives = 60/85 (70.59%), Query Frame = 2
Query:    2 HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            +DGT+TYGGYSDIMV +EHF VRIP+   LDATAPLLCAG+TVYSPL+ + LDKPG+               KF KA G KVTVI
Sbjct:  130 YDGTLTYGGYSDIMVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKPGLHIGVVGLGGLGHMAVKFGKAFGAKVTVI 214          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.136e-22
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DGT+T+GGYSD MVADEHF++R P+  PLD+ APLLCAGIT YSPL++YGLDKPG                K AKA G +VTVI
Sbjct:  130 DGTMTHGGYSDTMVADEHFILRWPKNLPLDSGAPLLCAGITTYSPLKYYGLDKPGTKIGVVGLGGLGHVAVKMAKAFGAQVTVI 213          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.937e-22
Identity = 51/84 (60.71%), Postives = 58/84 (69.05%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DG+ITYGGY+D MVAD+HFV+R PE  PLD+ APLLCAGIT YSPLR++GLDKPG                K AKA G  VTVI
Sbjct:  107 DGSITYGGYADSMVADQHFVLRWPENLPLDSGAPLLCAGITTYSPLRYHGLDKPGTKVGVVGLGGLGHVAVKMAKAFGAHVTVI 190          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.937e-22
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            D T+T+GGYSD MV  E F++RIP+  PLD  APLLCAG+TVYSP++++GLDKPGM               KFAKAMG KVTVI
Sbjct:  126 DDTMTHGGYSDHMVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVVGLGGLGHVAVKFAKAMGTKVTVI 209          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.998e-20
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DGT+TYGGYS ++V  E FVV  PE  PLD  APLLCAGITVY+P++++GL+ PG                KFA+A G+KVTVI
Sbjct:  133 DGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPGKHVGVLGLGGLGHVAVKFARAFGLKVTVI 216          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.535e-19
Identity = 46/84 (54.76%), Postives = 55/84 (65.48%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DGT+TYGGYS ++V  E FVVR PE  PLD  APLLCAGITVYSP++++GL+ P                 KFAKA G+ VTVI
Sbjct:  123 DGTVTYGGYSSMVVVHERFVVRFPEAMPLDKGAPLLCAGITVYSPMKYHGLNVPSKHVGVLGLGGLGHVAVKFAKAFGMTVTVI 206          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.618e-19
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 2
Query:    2 HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            + GT TYGGYSD +V  + +VV+ P+  PLDA APLLCAGITVYSP+++YG+ +PG                KF KA G+KVTVI
Sbjct:  128 YKGTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVI 212          
The following BLAST results are available for this feature:
BLAST of FC921983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
MTDH_FRAAN1.531e-2768.24Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
CADH8_ARATH9.290e-2563.53Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
GEDH1_OCIBA1.585e-2464.29Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
MTDH_MESCR6.022e-2461.18Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
MTDH_APIGR1.136e-2259.52Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
MTDH_PETCR1.937e-2260.71Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
CADH7_ARATH1.937e-2258.33Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
CADH3_ORYSJ8.998e-2053.57Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CADH5_ORYSJ1.535e-1954.76Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
MTDH_MEDSA2.618e-1951.76Probable mannitol dehydrogenase OS=Medicago sativa... [more]

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Properties
Property NameValue
Genbank descriptionC06056C01T7 RindPdigS Citrus sinensis cDNA clone C06056C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921983 ID=FC921983; Name=FC921983; organism=Citrus sinensis; type=EST; length=257bp
CCATGATGGAACCATCACATACGGAGGCTACTCTGACATTATGGTTGCCG
ATGAGCACTTTGTGGTCCGTATTCCTGAAGGCACACCACTTGACGCCACT
GCCCCTCTCCTCTGTGCTGGTATCACAGTCTACAGTCCGTTGAGATTCTA
TGGACTCGACAAGCCTGGTATGCATGTGGGTGTTGTCGGCTTGGGCGGTC
TAGGCCATGTCGCCGTCAAATTCGCAAAGGCTATGGGGGTCAAGGTGACT
GTGATCA
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