FC921982

Overview
NameFC921982
Unique NameFC921982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length241
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921982 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.161e-17
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = -3
Query:   48 GSKQLQNIRRGLRGDSVVLMGKNTKMKRTLF*NAEKTGNTAFLNLIPLFQGNVG 209
            GSKQLQNIR+GLRGDSVVLMGKNT MKR++  +AEKTGN AFLNLIPL  GNVG
Sbjct:   37 GSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRIHAEKTGNQAFLNLIPLLIGNVG 90          

HSP 2 Score: 22.3274 bits (46), Expect = 1.161e-17
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = -1
Query:  206 TQILVAAADNVG 241
            TQILV  ADNVG
Sbjct:   26 TQILVVNADNVG 37          
BLAST of FC921982 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.561e-16
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = -3
Query:   48 GSKQLQNIRRGLRGDSVVLMGKNTKMKRTLF*NAEKTGNTAFLNLIPLFQGNVG 209
            GS QLQNIR+GLRGDSVVLMGKNT MKR++  +AEKTGN A+LNLIPL  GNVG
Sbjct:   37 GSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAYLNLIPLLVGNVG 90          
BLAST of FC921982 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.663e-16
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = -3
Query:   48 GSKQLQNIRRGLRGDSVVLMGKNTKMKRTLF*NAEKTGNTAFLNLIPLFQGNVG 209
            GS QLQNIR+GLRGDSVVLMGKNT MKR++  ++E TGNTA LNL+PL QGNVG
Sbjct:   36 GSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVG 89          
BLAST of FC921982 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.663e-16
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = -3
Query:   48 GSKQLQNIRRGLRGDSVVLMGKNTKMKRTLF*NAEKTGNTAFLNLIPLFQGNVG 209
            GS QLQNIR+GLRGDSVVLMGKNT MKR++  +A+KTGN AFL+L+PL QGNVG
Sbjct:   37 GSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVG 90          
BLAST of FC921982 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.749e-16
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = -3
Query:   48 GSKQLQNIRRGLRGDSVVLMGKNTKMKRTLF*NAEKTGNTAFLNLIPLFQGNVG 209
            GS QLQNIR+GLRGDSVVLMGKNT MKR++  ++E +GNTA LNL+PL QGNVG
Sbjct:   36 GSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVG 89          
BLAST of FC921982 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.986e-12
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = -3
Query:   48 GSKQLQNIRRGLRGDSVVLMGKNTKMKRTLF*NAEKTGNTAFLNLIPLFQGNVG 209
            GS QLQ IR+GLRGDS+VLMGKNT ++R +  +A+ TGN  FL L+PL  GNVG
Sbjct:   37 GSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVG 90          

HSP 2 Score: 20.4014 bits (41), Expect = 1.986e-12
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = -1
Query:    5 KG*LKEVKEEV 37
            KG LKEV+EEV
Sbjct:   95 KGDLKEVREEV 105          
BLAST of FC921982 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 4.348e-12
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = -3
Query:   48 GSKQLQNIRRGLRGDSVVLMGKNTKMKRTLF*NAEKTGNTAFLNLIPLFQGNVG 209
            GSKQLQ+IRRGLRGDSVVLMGKNT ++R +   AEKTGN  F  L+ L  GNVG
Sbjct:   37 GSKQLQDIRRGLRGDSVVLMGKNTLIRRCIKVYAEKTGNHTFDPLMDLLVGNVG 90          

HSP 2 Score: 20.4014 bits (41), Expect = 4.348e-12
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = -1
Query:    5 KG*LKEVKEEV 37
            KG LKEV+EEV
Sbjct:   95 KGDLKEVREEV 105          
BLAST of FC921982 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 4.556e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = -3
Query:   48 GSKQLQNIRRGLRGDSVVLMGKNTKMKRTLF*NAEKTGNTAFLNLIPLFQGNVG 209
            GS QLQ IR GLRGDS+VLMGKNT MKR++  +AE TGN    N+  LF  NVG
Sbjct:   37 GSNQLQAIRIGLRGDSIVLMGKNTMMKRSIRLHAENTGNENLRNVEQLFLPNVG 90          

HSP 2 Score: 22.7126 bits (47), Expect = 4.556e-11
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = -1
Query:  206 TQILVAAADNVG 241
            +Q+L+A+ADNVG
Sbjct:   26 SQVLIASADNVG 37          
The following BLAST results are available for this feature:
BLAST of FC921982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RLA0_LUPLU1.161e-1781.4860S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_SOYBN1.561e-1677.7860S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA02_ARATH2.663e-1675.9360S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA01_ARATH2.663e-1675.9360S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA03_ARATH7.749e-1674.0760S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_ORYSJ1.986e-1262.9660S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE4.348e-1268.5260S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_CHERU4.556e-1162.9660S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
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Properties
Property NameValue
Genbank descriptionC06056B12T7 RindPdigS Citrus sinensis cDNA clone C06056B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921982 ID=FC921982; Name=FC921982; organism=Citrus sinensis; type=EST; length=241bp
TCCCAACCTCCTCTTTCACTTCCTTCAATCACCCTTTGTGACTTAAAGCC
AACATTGCCCTGAAAGAGGGGGATGAGATTGAGAAAGGCAGTGTTACCGG
TCTTCTCAGCGTTCTAAAAGAGAGTCCTCTTCATTTTAGTGTTCTTTCCC
ATTAGCACAACGGAGTCTCCACGCAGACCCCTACGAATGTTCTGGAGTTG
CTTGGACCCACGTTGTCGGCGGCCGCCACCAAGATTTGGGT
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