EG358220

Overview
NameEG358220
Unique NameEG358220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13484 contig Csv1_Contig13484:273..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: PSY_ARATH (Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1 PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 3.099e-65
Identity = 122/135 (90.37%), Postives = 128/135 (94.81%), Query Frame = 2
Query:    8 SRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLL 412
            SRY+NFD+LYLYCYYVAGTVGLMSVPVMGI P S+ATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSD+DIFAG+VT KWRNFMK Q+KRARMFFD AE GVTELS ASRWPVWASLLL
Sbjct:  239 SRYQNFDDLYLYCYYVAGTVGLMSVPVMGIDPKSKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKMQLKRARMFFDEAEKGVTELSAASRWPVWASLLL 373          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: PSY_CUCME (Phytoene synthase, chloroplastic OS=Cucumis melo GN=PSY PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 6.905e-65
Identity = 123/138 (89.13%), Postives = 129/138 (93.48%), Query Frame = 2
Query:    2 RGSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLT-NILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLL 412
            R SRYKNFDELYLYCYYVAGTVGLMSVPVMGIAP+SQA+TESVYNAALALGIANQ   NILRDVGEDARRGR+YLPQDELAQAGLSD+DIFAG VT KWRNFMKNQIKRARMFFD AE GV EL++ASRWPVWASLLL
Sbjct:  242 RKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPESQASTESVYNAALALGIANQAPPNILRDVGEDARRGRIYLPQDELAQAGLSDEDIFAGRVTDKWRNFMKNQIKRARMFFDEAEKGVLELNKASRWPVWASLLL 379          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: PSY1_SOLLC (Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1 PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 7.634e-64
Identity = 121/137 (88.32%), Postives = 127/137 (92.70%), Query Frame = 2
Query:    2 RGSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLL 412
            R SRYKNFDELYLYCYYVAGTVGLMSVP+MGIAP+S+ATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSD+DIFAG VT KWR FMK QI RAR FFD AE GVTELS ASR+PVWASL+L
Sbjct:  226 RKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGRVTDKWRIFMKKQIHRARKFFDEAEKGVTELSSASRFPVWASLVL 362          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: PSY_NARPS (Phytoene synthase, chloroplastic OS=Narcissus pseudonarcissus GN=PSY PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 9.970e-64
Identity = 117/135 (86.67%), Postives = 126/135 (93.33%), Query Frame = 2
Query:    8 SRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLL 412
            SRYKNFDELYLYCYYVAGTVGLMSVPVMGIAP+S A  ESVYNAALALGIANQLTNILRDVGEDARRGR+YLPQDELA+AGLSD+D+F G+VT KWR+FMK QIKRAR FF+ AE GVTELS+ASRWPVWASLLL
Sbjct:  236 SRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPESLAEAESVYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELAEAGLSDEDVFTGKVTDKWRSFMKRQIKRARTFFEQAEKGVTELSQASRWPVWASLLL 370          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: PSY_CAPAN (Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.302e-63
Identity = 121/137 (88.32%), Postives = 127/137 (92.70%), Query Frame = 2
Query:    2 RGSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLL 412
            R SRY+NFDELYLYCYYVAGTVGLMSVP+MGIAP+S+ATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSD+DIFAG VT KWR FMK QI+RAR FFD AE GVTELS ASRWPV ASLLL
Sbjct:  238 RKSRYRNFDELYLYCYYVAGTVGLMSVPIMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGRVTDKWRIFMKKQIQRARKFFDEAEKGVTELSAASRWPVLASLLL 374          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: PSY2_SOLLC (Phytoene synthase 2, chloroplastic (Fragment) OS=Solanum lycopersicum GN=PSY2 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 2.901e-63
Identity = 120/135 (88.89%), Postives = 126/135 (93.33%), Query Frame = 2
Query:    8 SRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLL 412
            SRY NFDELYLYCYYVAGTVGLMSVP+MGIAP+S+ATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSD+DIFAG+VT KWR FMK QI+RAR FFD AE GVTELS ASRWPV ASLLL
Sbjct:  124 SRYNNFDELYLYCYYVAGTVGLMSVPIMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRIFMKKQIQRARKFFDEAEKGVTELSSASRWPVLASLLL 258          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: PSY_MAIZE (Phytoene synthase, chloroplastic OS=Zea mays GN=Y1 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 3.789e-63
Identity = 117/137 (85.40%), Postives = 127/137 (92.70%), Query Frame = 2
Query:    2 RGSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLL 412
            R +RY NFDELY+YCYYVAGTVGLMSVPVMGIA +S+ATTESVY+AALALGIANQLTNILRDVGEDARRGR+YLPQDELAQAGLSD+DIF G VT +WRNFMK QIKRARMFF+ AE GV ELS+ASRWPVWASLLL
Sbjct:  224 RKTRYNNFDELYMYCYYVAGTVGLMSVPVMGIATESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQDELAQAGLSDEDIFKGVVTNRWRNFMKRQIKRARMFFEEAERGVNELSQASRWPVWASLLL 360          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: PSY_DAUCA (Phytoene synthase, chloroplastic OS=Daucus carota GN=PSY PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 8.734e-60
Identity = 112/135 (82.96%), Postives = 123/135 (91.11%), Query Frame = 2
Query:    8 SRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLL 412
            SRY+ FDELYLYCYYVAGTVGLMSVPVMGIAP+S+ATTESVY+AALALGIANQLTNILRDVGEDARRGR+YLPQ+EL  AG++ + IF G+VT KWR+FMK QIKRARMFFD AE GV ELS ASRWPVWASLLL
Sbjct:  218 SRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLL 352          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: CRTB_SYNE7 (Phytoene synthase OS=Synechococcus elongatus (strain PCC 7942) GN=crtB PE=3 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 6.289e-42
Identity = 85/141 (60.28%), Postives = 102/141 (72.34%), Query Frame = 2
Query:    8 SRYKNFDELYLYCYYVAGTVGLMSVPVMGI------APDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLL 412
            +RY  F++LY YCY VAGTVGLMS PVMGI      AP    T       ALALGIANQLTNILRDVGEDARRGR+YLPQ+ELAQ   S+ D+F G +  +WR FM+ Q+ RAR +F+ AE G+ +LS  +RWPVWASL+L
Sbjct:  127 NRYSTFEDLYTYCYRVAGTVGLMSQPVMGIESTNSRAPWDPTTPPDPTQEALALGIANQLTNILRDVGEDARRGRIYLPQEELAQFNYSEQDLFNGVIDDRWRAFMQFQLDRARDYFEQAERGIRQLSHDARWPVWASLML 267          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: CRTY_SPIPL (Phytoene synthase OS=Spirulina platensis GN=crtB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.955e-37
Identity = 80/142 (56.34%), Postives = 99/142 (69.72%), Query Frame = 2
Query:    8 SRYKNFDELYLYCYYVAGTVGLMSVPVMGIA-PDSQAT---TESVY---NAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLL 412
            +RY  FDEL LYCY VAGTVGLMS+ VMG A PD        +S+Y     A+ALGIANQLTNILRDVGEDARRGR+YLP D+LA    ++ D+  G+V  +WR  M+ QI+RAR F+ +AE G+  L    RWPVW +L+L
Sbjct:  127 NRYNTFDELNLYCYRVAGTVGLMSLAVMGTAEPDLSVPWNRDQSIYYPKEEAIALGIANQLTNILRDVGEDARRGRIYLPLDDLALFNYTEADLLNGKVDERWRELMRFQIQRARKFYTLAEEGIAALHPDIRWPVWTALML 268          
The following BLAST results are available for this feature:
BLAST of EG358220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSY_ARATH3.099e-6590.37Phytoene synthase, chloroplastic OS=Arabidopsis th... [more]
PSY_CUCME6.905e-6589.13Phytoene synthase, chloroplastic OS=Cucumis melo G... [more]
PSY1_SOLLC7.634e-6488.32Phytoene synthase 1, chloroplastic OS=Solanum lyco... [more]
PSY_NARPS9.970e-6486.67Phytoene synthase, chloroplastic OS=Narcissus pseu... [more]
PSY_CAPAN1.302e-6388.32Phytoene synthase, chloroplastic OS=Capsicum annuu... [more]
PSY2_SOLLC2.901e-6388.89Phytoene synthase 2, chloroplastic (Fragment) OS=S... [more]
PSY_MAIZE3.789e-6385.40Phytoene synthase, chloroplastic OS=Zea mays GN=Y1... [more]
PSY_DAUCA8.734e-6082.96Phytoene synthase, chloroplastic OS=Daucus carota ... [more]
CRTB_SYNE76.289e-4260.28Phytoene synthase OS=Synechococcus elongatus (stra... [more]
CRTY_SPIPL7.955e-3756.34Phytoene synthase OS=Spirulina platensis GN=crtB P... [more]

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Properties
Property NameValue
Genbank description9a8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0009a8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358220 ID=EG358220; Name=EG358220; organism=Citrus sinensis; type=EST; length=412bp
ACGCGGGTCAAGATACAAAAACTTTGATGAATTATACTTGTATTGTTATT
ATGTTGCTGGGACCGTAGGGCTAATGAGTGTTCCAGTTATGGGCATAGCA
CCTGACTCACAGGCAACAACAGAGAGCGTCTACAATGCAGCATTGGCACT
AGGGATTGCTAATCAGCTCACTAACATACTCAGAGATGTTGGAGAGGATG
CCCGAAGAGGAAGGGTTTATCTACCACAAGATGAGTTGGCACAGGCAGGG
CTTTCAGATGATGACATATTTGCTGGAGAGGTGACCATTAAATGGAGAAA
CTTCATGAAGAACCAAATTAAGAGGGCAAGGATGTTCTTTGATATGGCTG
AGAACGGTGTGACCGAGCTGAGTGAAGCTAGTCGATGGCCGGTATGGGCT
TCATTGCTGTTG
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