CX047746

Overview
NameCX047746
Unique NameCX047746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 3.023e-67
Identity = 108/163 (66.26%), Postives = 126/163 (77.30%), Query Frame = -3
Query:  364 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 852
            CGT+LDHGV AVGYGTENG DYWIV+NSWG SWGE GY+RMERN+  + +GKCGIA+E SY                     P VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  283 CGTALDHGVAAVGYGTENGKDYWIVRNSWGKSWGESGYVRMERNIKAS-SGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.149e-66
Identity = 106/170 (62.35%), Postives = 128/170 (75.29%), Query Frame = -3
Query:  343 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 852
            CGT LDHGV AVGYGTENG DYWIV+NSWG SWGE GY+RM RN+A + +GKCGIA+E SY                     P  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  291 CGTQLDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASS-SGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.252e-57
Identity = 95/171 (55.56%), Postives = 117/171 (68.42%), Query Frame = -3
Query:  340 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 852
            CGT++DHGV   GYGTENG DYWIV+NSWG++  E GY+R++RNV+ + +G CG+A+E SY                     P  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  172 CGTAVDHGVVIAGYGTENGMDYWIVRNSWGANCRENGYLRVQRNVSSS-SGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.192e-55
Identity = 99/168 (58.93%), Postives = 113/168 (67.26%), Query Frame = -3
Query:  367 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 852
            CGTSLDHGV AVGYGT+NG DYWIV+NSWG  WGE GY+RMERN+  T TGKCGIAM ASY                     P       VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  296 CGTSLDHGVVAVGYGTDNGKDYWIVRNSWGPKWGESGYVRMERNINVT-TGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 5.018e-46
Identity = 86/169 (50.89%), Postives = 99/169 (58.58%), Query Frame = -3
Query:  364 CGTSLDHGVTAVGYGTE--NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 852
            CGT+LDHGV AVGYGT+   GA YW V+NSWG  WGE GYIRMERNV    TGKCGIAM ASY                        CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  311 CGTNLDHGVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTAR-TGKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.570e-23
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = -3
Query:  670 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            CGT+LDH V AVGYG+ENG DYWIV+NSWG  WGE GYIRMERN+A + +GKCGIA+EASY
Sbjct:  299 CGTNLDHAVVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASY 359          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.869e-22
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = -3
Query:  670 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            CGT++DH V AVGYG+ENG DYWIV+NSWG+ WGE GYIRMERNVA + +GKCGIA+EASY
Sbjct:  254 CGTNMDHAVVAVGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVA-SKSGKCGIAIEASY 313          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.165e-18
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = -3
Query:  670 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            CGT+L+HGV  VGYGTENG DYWIVKNS G +WGE GY++M RN+A    G CGIAM ASY
Sbjct:  298 CGTNLNHGVVVVGYGTENGRDYWIVKNSRGDTWGEAGYMKMARNIANP-RGLCGIAMRASY 357          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.521e-18
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = -3
Query:  670 CGTSLDHGVTAVGYG-TENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            CGT LDHGV  VGYG T +G  YWIVKNSWG  WGE GYIRM+R ++    GKCGIAMEASY
Sbjct:  283 CGTELDHGVAIVGYGATRDGTKYWIVKNSWGEEWGESGYIRMQRGISDK-RGKCGIAMEASY 343          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.389e-18
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = -3
Query:  670 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            CGT+L+HGV  VGYGTENG DYW+VKNS G +WGE GY++M RN+A    G CGIAM ASY
Sbjct:  291 CGTNLNHGVVVVGYGTENGRDYWLVKNSRGITWGEAGYMKMARNIANP-RGLCGIAMRASY 350          
The following BLAST results are available for this feature:
BLAST of CX047746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ORYA_ORYSJ3.023e-6766.26Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.149e-6662.35Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC8.252e-5755.56Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ1.192e-5558.93Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ5.018e-4650.89Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
GCP1_ARATH4.570e-2375.41Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP4_BRANA3.869e-2275.41Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CPR4_ARATH1.165e-1868.85Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CYSP_HEMSP1.521e-1869.35Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CPR3_ARATH3.389e-1867.21Probable cysteine proteinase At4g11310 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16C08-E15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047746 ID=CX047746; Name=CX047746; organism=Citrus sinensis; type=EST; length=854bp
TTTTTTTTTTTTTTTTTCGTTAAATATCAATTCATAAAAGCCTCCGCTGA
ATGATGCCAGGGATTTGGTGGAGGACATTGGAAATAGATAACAACAATTT
GTTTGTGCATTGTTCGGATTCAACGCAAATAGATAACTTACAACGCTATA
TACAAAACCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGT
ACATTAACGTTTGAAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGA
AACTCATTCACAAGCACGAATATCTTCATCCTCCCTTCGGCCTTCCACTG
CTCTTACAGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTC
CATGAGCCCAGTAAGGTTTAGCAGGGGTGCGTCGCAATGCCCTCACTCCC
AATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGAT
GGGATAGTCATGTGGGCAGCAGCTATAGTGGTCATCACAGCAGGTGGCAG
CCTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAG
ACACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACAC
AGCAGGAGGCTTTGTTGGAGATGGAGGAGACGGTCCGGGGTTGGGAGGAT
TTTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTG
CCCGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCACCCTC
TCCCCAGCTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCAT
TTTCTGTGCCATATCCAACAGCAGTAACACCATGGTCCAGAGATGTCCCA
CATC
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