CX047740

Overview
NameCX047740
Unique NameCX047740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047740 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 4.912e-108
Identity = 197/202 (97.52%), Postives = 200/202 (99.01%), Query Frame = -2
Query:  282 TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 887
            TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG DENGPSLYYTDPSGTFWQCN KAIGSGSEGADSSLQEQ+NKDLTLQEAETIALSILKQVMEEKVTPNNVDIA+VAPTYHLYTPSEVEAVI+RL
Sbjct:   36 TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEEKVTPNNVDIAKVAPTYHLYTPSEVEAVISRL 237          
BLAST of CX047740 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 3.520e-106
Identity = 192/202 (95.05%), Postives = 199/202 (98.51%), Query Frame = -2
Query:  282 TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 887
            TAIGLKTK+GVVLAVEKR+TSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA+CDLALRFGEGDEESMSRPFGVSLLIAG DENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK+LTLQEAETIALSILKQVMEEKVTPNNVDIA+V+P YHLYTP+EVEAVI RL
Sbjct:   36 TAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPNYHLYTPAEVEAVIARL 237          
BLAST of CX047740 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 383.259 bits (983), Expect = 1.024e-105
Identity = 191/202 (94.55%), Postives = 199/202 (98.51%), Query Frame = -2
Query:  282 TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 887
            TAIG+KTKEGVVLAVEKRITSPLLEPSSVEKIMEID+HIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG+EESMSRPFGVSLLIAG DENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ+NKD+TLQEAETIA+SILKQVMEEKVTPNNVDIA+VAP YHLYTP EVEAVI+RL
Sbjct:   36 TAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDITLQEAETIAVSILKQVMEEKVTPNNVDIAKVAPAYHLYTPQEVEAVISRL 237          
BLAST of CX047740 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 3.892e-105
Identity = 191/202 (94.55%), Postives = 198/202 (98.02%), Query Frame = -2
Query:  282 TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 887
            TAIG+KTKEGVVLAVEKRITSPLLEPSSVEKIMEID+HIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG+EESMSRPFGVSLLIAG DENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ+NKDL+LQEAETIA+SILKQVMEEKVTPNNVDIA+VAP YHLYTP EVEAVI RL
Sbjct:   36 TAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLSLQEAETIAVSILKQVMEEKVTPNNVDIAKVAPAYHLYTPQEVEAVIARL 237          
BLAST of CX047740 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.708e-68
Identity = 133/203 (65.52%), Postives = 164/203 (80.79%), Query Frame = -2
Query:  291 TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP--TYHLYTPSEVEAVI 887
            TAIG++T EGV LAVEKRITSPL+EPSS+EKI+EID HIGCAMSGLIADA+TL++ ARVETQNH F+Y E MTVES TQA+ +LAL+FGE D +  +MSRPFGV+LL  G DE GP L++ DPSGTF QC+A+AIGS SEGA SSLQE Y+K +TL+EA   +L ILKQVMEEK+   N+++A V P   +H++T  E+E VI
Sbjct:   36 TAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
BLAST of CX047740 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 259.61 bits (662), Expect = 1.708e-68
Identity = 133/203 (65.52%), Postives = 164/203 (80.79%), Query Frame = -2
Query:  291 TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP--TYHLYTPSEVEAVI 887
            TAIG++T EGV LAVEKRITSPL+EPSS+EKI+EID HIGCAMSGLIADA+TL++ ARVETQNH F+Y E MTVES TQA+ +LAL+FGE D +  +MSRPFGV+LL  G DE GP L++ DPSGTF QC+A+AIGS SEGA SSLQE Y+K +TL+EA   +L ILKQVMEEK+   N+++A V P   +H++T  E+E VI
Sbjct:   36 TAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
BLAST of CX047740 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.708e-68
Identity = 133/203 (65.52%), Postives = 164/203 (80.79%), Query Frame = -2
Query:  291 TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP--TYHLYTPSEVEAVI 887
            TAIG++T EGV LAVEKRITSPL+EPSS+EKI+EID HIGCAMSGLIADA+TL++ ARVETQNH F+Y E MTVES TQA+ +LAL+FGE D +  +MSRPFGV+LL  G DE GP L++ DPSGTF QC+A+AIGS SEGA SSLQE Y+K +TL+EA   +L ILKQVMEEK+   N+++A V P   +H++T  E+E VI
Sbjct:   36 TAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
BLAST of CX047740 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.805e-68
Identity = 133/203 (65.52%), Postives = 163/203 (80.30%), Query Frame = -2
Query:  291 TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP--TYHLYTPSEVEAVI 887
            TAIG++T EGV LAVEKRITSPL+EPSS+EKI+EID HIGCAMSGLIADA+TL++ ARVETQNH F+Y E MTVES TQA+ +LAL+FGE D +  +MSRPFGV+LL  G DE GP L++ DPSGTF QC+A+AIGS SEGA SSLQE Y+K  TL+EA   +L ILKQVMEEK+   N+++A V P   +H++T  E+E VI
Sbjct:   36 TAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSTTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
BLAST of CX047740 vs. ExPASy Swiss-Prot
Match: PSA5_DICDI (Proteasome subunit alpha type-5 OS=Dictyostelium discoideum GN=psmA5 PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.805e-68
Identity = 128/206 (62.14%), Postives = 165/206 (80.10%), Query Frame = -2
Query:  282 IGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE---GDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINRL 881
            IG++ +EGVVLAVEKR+TSPLLEPSS++K++EID H+ CA+SGL+ADART+++HAR+ETQNHRF+Y EPM VES  Q++CDLALRFGE     EE MSRPFGV+LLIAG DE GPSLYY+DPSGTF Q +AKAIG+GSEGA ++LQE+Y+K LT+ E + +AL+ LKQVMEE +T  NV++A +      + +Y   E+  VI  L
Sbjct:   35 IGVQCEEGVVLAVEKRLTSPLLEPSSIQKVVEIDYHLICALSGLVADARTIIDHARIETQNHRFNYNEPMGVESCVQSICDLALRFGENRNSGEERMSRPFGVALLIAGIDEKGPSLYYSDPSGTFTQFHAKAIGAGSEGAQTTLQEKYSKTLTIAECQKLALTTLKQVMEEAITTTNVELAVITKADQKFKIYNKEELATVIQTL 240          
BLAST of CX047740 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.107e-67
Identity = 126/206 (61.17%), Postives = 164/206 (79.61%), Query Frame = -2
Query:  285 TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE---GDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINR 887
            TAIG+KTK+ VVL VEKR+TSPL+E  SVEK+ EID HIGCA+SGL ADART++EHARV+TQNHRF+Y EP  +ESTTQ++CDLALRFGE   G+E  MSRPFGV+LLIAG DE+GP LY+++PSGT+++  AKAIGSGSE A S L ++++KD+TL+EAE + L +L+QVMEEK+   NV +A+V     +H+Y   E+   + R
Sbjct:   36 TAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVMEEKLDSKNVQLAKVTAEGGFHIYNDEEMADAVAR 241          
The following BLAST results are available for this feature:
BLAST of CX047740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
PSA5_SOYBN4.912e-10897.52Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA5_ORYSJ3.520e-10695.05Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSA5B_ARATH1.024e-10594.55Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA5A_ARATH3.892e-10594.55Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSA5_MOUSE1.708e-6865.52Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN1.708e-6865.52Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]
PSA5_BOVIN1.708e-6865.52Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSA5_RAT3.805e-6865.52Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]
PSA5_DICDI3.805e-6862.14Proteasome subunit alpha type-5 OS=Dictyostelium d... [more]
PSA5_SCHPO1.107e-6761.17Probable proteasome subunit alpha type-5 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16C05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16C05-E9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047740 ID=CX047740; Name=CX047740; organism=Citrus sinensis; type=EST; length=888bp
TTAAAAACAAGATTTTAATCTAAATTTCCATTAGGTTCATATCGTTCATA
CAAATGAGAAGTACTTCAGTTCTGCACGGACACAGATTTCGGGGTTATGA
TAGGCAGCTCAAACCCAGCACCAAAACAGAAAGGTTCAAATGGGTGCAAT
CCCAATCATAAACAAATATAATTGTTTCCCCTAACAAACAAACTACGAAG
TGCACTTGCACTGCAAAGAACTGAAGAAACACCACTGAAGCCAGGGAAGA
AATTTTAAAGATGATTTTCTCTGGATACTCATAGGCGATTGATGACAGCC
TCCACCTCAGAAGGGGTATAGAGATGATACGTTGGAGCTACCCTTGCGAT
ATCAACATTGTTTGGAGTGACCTTTTCTTCCATAACTTGCTTCAAAATTG
ATAGAGCAATTGTCTCTGCTTCCTGAAGGGTTAAATCCTTGTTATATTGC
TCTTGGAGAGAACTGTCAGCTCCTTCTGAACCTGAACCAATAGCCTTTGC
ATTGCATTGCCAGAATGTGCCAGATGGATCTGTATAGTACAGGCTAGGTC
CATTCTCGTCGGATCCAGCAATAAGAAGGGATACTCCAAATGGTCGAGAC
ATGGATTCTTCATCGCCTTCACCAAAGCGTAGCGCCAGGTCACAGAGTGC
TTGTGTAGTAGATTCTACGGTCATTGGCTCACCATATGAGAATCTATGAT
TCTGAGTTTCAACCCTTGCATGTTCAACAAGTGTACGAGCATCAGCAATC
AATCCACTCATAGCACATCCTATATGCTCATCAATTTCCATAATCTTCTC
CACACTGCTGGGCTCCAGCAGTGGTGAAGTAATGCGTTTCTCGACAGCAA
GCACAACCCCTTCTTTCGTCTTCAACCCAATTGCAGTT
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