CX047737

Overview
NameCX047737
Unique NameCX047737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047737 vs. ExPASy Swiss-Prot
Match: RT10_PEA (Ribosomal protein S10, mitochondrial OS=Pisum sativum GN=RPS10 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = -1 
Query:  586 LPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEMEIKKKFLVIKTERHE 735
            LPPYT KIGLPESRVLYTVLRSPHIDKKSREQFEMEIKKK+LVIKTE+HE
Sbjct:   24 LPPYTWKIGLPESRVLYTVLRSPHIDKKSREQFEMEIKKKYLVIKTEKHE 73
[Close]
BLAST of CX047737 vs. ExPASy Swiss-Prot
Match: RT10_ARATH (40S ribosomal protein S10, mitochondrial OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 36/50 (72.00%), Postives = 44/50 (88.00%), Query Frame = -1 
Query:  586 LPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEMEIKKKFLVIKTERHE 735
            LPP+TRK+ +P++R LYTVLRSPH+DKKSREQFEM  KK+FLVIK + HE
Sbjct:  147 LPPHTRKVAMPDTRTLYTVLRSPHVDKKSREQFEMRFKKRFLVIKAQSHE 196
[Close]
BLAST of CX047737 vs. ExPASy Swiss-Prot
Match: RT10_MARPO (Ribosomal protein S10, mitochondrial OS=Marchantia polymorpha GN=RPS10 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.683e-13
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = -1 
Query:  586 TRKIGLPESRVLYTVLRSPHIDKKSREQFEMEIKKKFLVIKTERHE 723
            TRKIGLP+ + LYTVLRSPHIDKKSREQFEM I K+ LVI+TE H+
Sbjct:   23 TRKIGLPKKQTLYTVLRSPHIDKKSREQFEMRIHKQLLVIETETHK 68
The following BLAST results are available for this feature:
BLAST of CX047737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RT10_PEA4.969e-2094.00Ribosomal protein S10, mitochondrial OS=Pisum sati... [more]
RT10_ARATH9.697e-1672.0040S ribosomal protein S10, mitochondrial OS=Arabid... [more]
RT10_MARPO7.683e-1376.09Ribosomal protein S10, mitochondrial OS=Marchantia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_16C04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16C04-E7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047737 ID=CX047737; Name=CX047737; organism=Citrus sinensis; type=EST; length=744bp
CCCTTTCTTATTATTAGTAAGATAGGGTGCCCCTTTCTCTAATAATAAGG
TAAGCTTCCCTGAATTCCGCTGGGTGAGCCTTCGCTTTTTGGATCGTCTT
CTGCCCAATGCGGTACCCTCCCGTTTGTTTTTAGGTTCCCATTGGGTTTA
CCTTGTTTACAGGTCGATCCCATGGCAGCAAGAAAAGGTGATCTTGTGCT
ATACTCCGGTGATCTCTTTCCTACCGAGGCACGCAAACTCCCATCGTGTC
CCAGATCACATTTCGTGAATCGAAAGGGGAAGCCTCCTCATCCATCAGCT
CCTCTCGTAGATCAGTGCGGTTTTACGAAGCGTCTAAGCACAGTTCACTC
GCGTTGATCAATCAAGAGCTTTGCCGCCACTCCTTAAGGTTACCTGTTGT
ATCATACACTTCTTGCATTCTTTCCCACGCTTCATACCCCCCTCTAGCTT
CCCCACGGAGCGGTAAGGTAAAGGGCCAGGCATGGTGGGGTAGGAGCATC
CTGTCAGCAATCTTTTTGGCTTGACCAAGAAGTCTTATGTCCTCCGAGTC
GCGCGGCGTTTTAACCGAAAGAACTTCTTGCGCAATTCATGCCTTTCTGT
TTTTATGACCAGAAATTTTTTCTTGATTTCCATTTCAAATTGTTCTCTGG
ACTTTTTATCAATATGAGGTGATCGTAACACAGTATATAAGACTCGTGAT
TCAGGCAATCCAATCTTTCGTGTGTAAGGCGGAAGCGCCTGGTT
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