CX047725

Overview
NameCX047725
Unique NameCX047725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047725 vs. ExPASy Swiss-Prot
Match: NU3M_WHEAT (NADH-ubiquinone oxidoreductase chain 3 OS=Triticum aestivum GN=ND3 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.277e-56
Identity = 104/118 (88.14%), Postives = 106/118 (89.83%), Query Frame = 1 
Query:  157 MLEFAPICIYXXXXXXXXXXXXGLPFLFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 510
            MLEFAPICIY            G+PFLF+SNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE
Sbjct:    1 MLEFAPICIYLVISLLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 118
[Close]
BLAST of CX047725 vs. ExPASy Swiss-Prot
Match: NU3M_HELAN (NADH-ubiquinone oxidoreductase chain 3 OS=Helianthus annuus GN=ND3 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.277e-56
Identity = 104/118 (88.14%), Postives = 106/118 (89.83%), Query Frame = 1 
Query:  157 MLEFAPICIYXXXXXXXXXXXXGLPFLFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 510
            MLEFAPICIY            G+PFLF+SNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE
Sbjct:    1 MLEFAPICIYLVISLLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 118
[Close]
BLAST of CX047725 vs. ExPASy Swiss-Prot
Match: RT12_HELAN (Ribosomal protein S12, mitochondrial OS=Helianthus annuus GN=RPS12 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.160e-55
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:  562 MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDL 873
            MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHS+VLIRGGRVKDLPGVKFHCIRGVKDL
Sbjct:    1 MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSIVLIRGGRVKDLPGVKFHCIRGVKDL 104
[Close]
BLAST of CX047725 vs. ExPASy Swiss-Prot
Match: RT12_WHEAT (Ribosomal protein S12, mitochondrial OS=Triticum aestivum GN=RPS12 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.993e-54
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:  562 MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDL 873
            MPT NQLIRHGREEKRRTDRTRALDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHS+VL+RGGRVKDLPGVKFHCIRGVKDL
Sbjct:    1 MPTKNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSIVLVRGGRVKDLPGVKFHCIRGVKDL 104
[Close]
BLAST of CX047725 vs. ExPASy Swiss-Prot
Match: RT12_MAIZE (Ribosomal protein S12, mitochondrial OS=Zea mays GN=RPS12 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.993e-54
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:  562 MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDL 873
            MPT NQLIRHGREEKRRTDRTRALDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHS+VL+RGGRVKDLPGVKFHCIRGVKDL
Sbjct:    1 MPTKNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSIVLVRGGRVKDLPGVKFHCIRGVKDL 104
[Close]
BLAST of CX047725 vs. ExPASy Swiss-Prot
Match: NU3M_MAIZE (NADH-ubiquinone oxidoreductase chain 3 OS=Zea mays GN=ND3 PE=2 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 3.993e-54
Identity = 102/118 (86.44%), Postives = 104/118 (88.14%), Query Frame = 1 
Query:  157 MLEFAPICIYXXXXXXXXXXXXGLPFLFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 510
            MLEFAPICIY            G+PFLF+SNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLIL IG LYEWKRGALDWE
Sbjct:    1 MLEFAPICIYLVISLLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILFIGSLYEWKRGALDWE 118
[Close]
BLAST of CX047725 vs. ExPASy Swiss-Prot
Match: NU3M_RAPSA (NADH-ubiquinone oxidoreductase chain 3 OS=Raphanus sativus GN=ND3 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.215e-54
Identity = 101/119 (84.87%), Postives = 105/119 (88.24%), Query Frame = 1 
Query:  154 VMLEFAPICIYXXXXXXXXXXXXGLPFLFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 510
            +MLEFAPI IY            G+PFLF+SNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILF+IFDLEVTFFFPWAVSLNKIDLFGFWSMMAFL ILTIGFLYEWKRGALDWE
Sbjct:    1 MMLEFAPIFIYLVISLLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFLIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLFILTIGFLYEWKRGALDWE 119
[Close]
BLAST of CX047725 vs. ExPASy Swiss-Prot
Match: NU3M_BRANA (NADH-ubiquinone oxidoreductase chain 3 OS=Brassica napus GN=ND3 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.215e-54
Identity = 101/119 (84.87%), Postives = 105/119 (88.24%), Query Frame = 1 
Query:  154 VMLEFAPICIYXXXXXXXXXXXXGLPFLFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 510
            +MLEFAPI IY            G+PFLF+SNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILF+IFDLEVTFFFPWAVSLNKIDLFGFWSMMAFL ILTIGFLYEWKRGALDWE
Sbjct:    1 MMLEFAPIFIYLVISLLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFLIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLFILTIGFLYEWKRGALDWE 119
[Close]
BLAST of CX047725 vs. ExPASy Swiss-Prot
Match: NU3M_ARATH (NADH-ubiquinone oxidoreductase chain 3 OS=Arabidopsis thaliana GN=ND3 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 5.215e-54
Identity = 101/119 (84.87%), Postives = 105/119 (88.24%), Query Frame = 1 
Query:  154 VMLEFAPICIYXXXXXXXXXXXXGLPFLFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 510
            +MLEFAPI IY            G+PFLF+SNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILF+IFDLEVTFFFPWAVSLNKIDLFGFWSMMAFL ILTIGFLYEWKRGALDWE
Sbjct:    1 MMLEFAPIFIYLVISLLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFLIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLFILTIGFLYEWKRGALDWE 119
[Close]
BLAST of CX047725 vs. ExPASy Swiss-Prot
Match: NU3M_PINSY (NADH-ubiquinone oxidoreductase chain 3 OS=Pinus sylvestris GN=NAD3 PE=2 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 6.811e-54
Identity = 100/118 (84.75%), Postives = 103/118 (87.29%), Query Frame = 1 
Query:  157 MLEFAPICIYXXXXXXXXXXXXGLPFLFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 510
            M EFAPICIY            G+PFLF+SN STYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMM FLLILTIGFLYEWK+GALDWE
Sbjct:    1 MSEFAPICIYLVISLLVCLIPLGVPFLFASNGSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMVFLLILTIGFLYEWKKGALDWE 118
The following BLAST results are available for this feature:
BLAST of CX047725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU3M_WHEAT7.277e-5688.14NADH-ubiquinone oxidoreductase chain 3 OS=Triticum... [more]
NU3M_HELAN7.277e-5688.14NADH-ubiquinone oxidoreductase chain 3 OS=Helianth... [more]
RT12_HELAN6.160e-5599.04Ribosomal protein S12, mitochondrial OS=Helianthus... [more]
RT12_WHEAT3.993e-5497.12Ribosomal protein S12, mitochondrial OS=Triticum a... [more]
RT12_MAIZE3.993e-5497.12Ribosomal protein S12, mitochondrial OS=Zea mays G... [more]
NU3M_MAIZE3.993e-5486.44NADH-ubiquinone oxidoreductase chain 3 OS=Zea mays... [more]
NU3M_RAPSA5.215e-5484.87NADH-ubiquinone oxidoreductase chain 3 OS=Raphanus... [more]
NU3M_BRANA5.215e-5484.87NADH-ubiquinone oxidoreductase chain 3 OS=Brassica... [more]
NU3M_ARATH5.215e-5484.87NADH-ubiquinone oxidoreductase chain 3 OS=Arabidop... [more]
NU3M_PINSY6.811e-5484.75NADH-ubiquinone oxidoreductase chain 3 OS=Pinus sy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_16B08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16B08-C15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047725 ID=CX047725; Name=CX047725; organism=Citrus sinensis; type=EST; length=874bp
ATATGGCTCGATCGCTACGGGTAAGGGATTCACTTAGAGTTGAAGGATTG
GGGTTGAGTGAGTGAGTGAAGGGGTGCTTTTTTTTCTTCTTTCTTTTTTT
TTTTCTGGTATGCCGCTCCGCGAGCAAGGAGCGAGAGAACAAAGTGGGCT
GTGGTGATGTTAGAATTTGCACCTATTTGTATCTATTTAGTGATTAGTCT
GCTAGTTTCTTTAATCTTAGTCGGTCTTCCTTTTTTATTTTCTTCTAATA
GTTCGACCTATCCAGAAAAATTGTCGGCCTACGAATGTGGTTTCGATCCT
TTCGGTGATGCCAGAAGTCGTTTCGATATACGATTTTATCTTGTTTCAAT
TTTATTTATTATCTTTGATCTGGAAGTAACCTTTTTCTTTCCTTGGGCAG
TATCTCTCAACAAGATTGATCTGTTTGGATTTTGGTCCATGATGGCCTTT
TTATTGATTTTGACGATTGGATTTCTCTATGAATGGAAAAGGGGTGCTTT
GGATTGGGAGTAATCACTAGTGATAGGGCAAAAACCGGGGGGAAGGACAA
AGGAAAGAGCGATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAA
GAAAAACGGCGCACGGACCGTACTCGAGCTTTGGATCAATGTCCCCAGAA
GCAAGGAGTATGCCTGCGTGTTTCGACGAGAACACCGAAAAAACCTAATT
CAGCTCTACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATA
TTTGCTTACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGT
CTTAATAAGAGGAGGTAGAGTGAAAGATTTGCCAGGTGTGAAATTCCATT
GTATTCGAGGAGTCAAGGATTTGC
back to top