CX047723

Overview
NameCX047723
Unique NameCX047723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047723 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.827e-30
Identity = 72/200 (36.00%), Postives = 105/200 (52.50%), Query Frame = -3
Query:  217 SAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNXXXXXXXXXXXXXXXXXXXXAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWT 816
            SA M+CLE W  + LV ++GL+ N  +S   I++C+        F  GLSAA S RVSNELGAG    A                             +  FT   E++   + + P + +SI  + +Q ILSGVA G GWQ +  +VNL T+Y IG+P+  + GFK +L V G+W G++ G+  Q  +L ++TL+  WT
Sbjct:  283 SAVMLCLEIWYNQGLVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWT 482          
BLAST of CX047723 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.576e-25
Identity = 57/182 (31.32%), Postives = 98/182 (53.85%), Query Frame = -3
Query:  280 AMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNXXXXXXXXXXXXXXXXXXXXAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGL 825
            A+P   M+C E+W+FE++ F +G++  +EL++  +++   T  + YN ++G++AAA+TRV N +GAG    AK                         N W   FT  +++V   A++ P + +  I D  Q +  G+ RG G Q +   VN   +Y +G+P+A++  FKL+  + GLWIG+
Sbjct:  326 AVPGVIMICSEYWAFELVTFASGVLGTTELAS--MSVLSTTSTLSYNLAFGVAAAAATRVGNLIGAGNTKLAKLATHVSINLGAAIGVIIAVILFLTRNTWTYIFTSDKDVVALVATIIPLVALINIADNTQCVAGGLLRGQGRQRIGGVVNFIAYYLLGLPVAIILCFKLDWGLYGLWIGI 505          
BLAST of CX047723 vs. ExPASy Swiss-Prot
Match: S47A1_RABIT (Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.164e-24
Identity = 64/204 (31.37%), Postives = 95/204 (46.57%), Query Frame = -3
Query:  214 AMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNXXXXXXXXXXXXXXXXXXXXAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTK 825
            A+PS  M+C+E+W++EI  FL+G++   EL    +        I Y    GLS A + RV N LGAG I++AK                         ++    FT  R+I+   A +TP   +S +F+++     G+ RG G Q     VN   +Y +G+P+ +   F   L V GLW+G+V    SQA        R  WTK
Sbjct:  262 AIPSMLMLCMEWWAYEIGSFLSGILGMVELGAQSVTY--ELAVIVYMIPMGLSVAVNVRVGNALGAGNIEQAKKSSAVALLVTELIAVVFCVMLLSCKDLVGYIFTSDRDIIALVAQVTPIYAVSHLFESLAGTSGGILRGSGNQKFGAIVNAIGYYVVGLPIGIALMFAAKLGVIGLWLGIVVCAVSQAVCFLGFIARLNWTK 463          
BLAST of CX047723 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.150e-23
Identity = 65/205 (31.71%), Postives = 100/205 (48.78%), Query Frame = -3
Query:  211 AMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNXXXXXXXXXXXXXXXXXXXXAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKM 825
            A+PS  MVC+E+W+FEI  FLAGL+  +EL     A+     ++ Y   +G   AAS RV N LGAG  D+A+                     A   ++ A  FT+ ++I+   + + P      +FDA+     GV RG G Q +   +N   +Y  G P+ +   F   L + GLW GL+  ++ QA S  +  LR  W+++
Sbjct:  272 AIPSMFMVCIEWWTFEIGTFLAGLVNVTELGAQ--AVIYELASVAYMVPFGFGVAASVRVGNALGAGNADQARCSCTTVLLCAGVCALLVGILLAALKDVVAYIFTNDKDIISLVSQVMPIFAPFHLFDALAGTCGGVLRGTGKQKIGAVLNTIGYYGFGFPIGVSLMFAAKLGIIGLWAGLIVCVSFQAFSYLIYILRTNWSRV 474          
BLAST of CX047723 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.371e-23
Identity = 65/204 (31.86%), Postives = 96/204 (47.06%), Query Frame = -3
Query:  214 AMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNXXXXXXXXXXXXXXXXXXXXAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTK 825
            A+PS  M+C+E+W++EI  FLAGL+  +EL    +   + T  I Y F  G + AAS RV N LGAG  +RAK                         ++ A  FT   EIV   + +        +FDA+  I  G+ RG G Q L    N+  +YF+G P  +   F L++ + GLWIG    +  Q+    ++  +  W K
Sbjct:  281 ALPSMLMLCVEWWTYEIGGFLAGLISETELGAQSVVYELAT--IAYMFPLGFAVAASVRVGNALGAGNTERAKLSAKVALVCGVLVSCVVATLIGCTKDVIAYIFTTEEEIVSRVSQVMIMYGFFHLFDAIAGITGGIVRGAGKQLLGALCNIVGYYFVGFPTGVSLMFALSMGIIGLWIGFFGCVFLQSLFFIILIYKLDWKK 482          
BLAST of CX047723 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.837e-21
Identity = 65/203 (32.02%), Postives = 94/203 (46.31%), Query Frame = -3
Query:  220 AMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNXXXXXXXXXXXXXXXXXXXXAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIG-LVCGLASQACSLFLITLRRKW 825
            A+PS  M+C+E+W++E+  FL+G++   EL    I        I Y    G S AA+ RV N LGAG ID+AK                         ++    FT   +IV   A + P   +S +F+A+     GV RG G Q +   VN   +Y IG+P+ +   F   L V GLW G ++C +   +C L  I  R  W
Sbjct:  262 AIPSMLMLCIEWWAYEVGSFLSGILGMVELGAQSITY--ELAIIVYMIPAGFSVAANVRVGNALGAGNIDQAKKSSAISLIVTELFAVTFCVLLLGCKDLVGYIFTTDWDIVALVAQVVPIYAVSHLFEALACTCGGVLRGTGNQKVGAIVNAIGYYVIGLPIGISLMFVAKLGVIGLWSGIIICSVCQTSCFLVFIA-RLNW 461          
BLAST of CX047723 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.399e-21
Identity = 61/204 (29.90%), Postives = 90/204 (44.12%), Query Frame = -3
Query:  214 AMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNXXXXXXXXXXXXXXXXXXXXAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTK 825
            A+PS  M+C+E+W++E+  FL+G++   EL    I        I Y    G S AA+ RV N LGAG ID+AK                         ++    FT  R+IV   A + P   +S +F+ +     G+ RG G Q +   VN   +Y IG+P+ +   F   L V GLW G++     Q         R  W +
Sbjct:  263 AIPSMLMLCIEWWAYEVGSFLSGILGMVELGAQSITY--ELAIIVYMIPSGFSVAANVRVGNALGAGNIDQAKKSSAISLIVTELFAVTFCVLLLGCKDLVGYIFTTDRDIVALVAQVIPIYAVSHLFEGLACTCGGILRGTGNQKVGAIVNAIGYYVIGLPIGIALMFAAKLGVIGLWSGIIICTTCQTTCFLAFIARLNWKR 464          
BLAST of CX047723 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.115e-21
Identity = 60/204 (29.41%), Postives = 92/204 (45.10%), Query Frame = -3
Query:  214 AMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNXXXXXXXXXXXXXXXXXXXXAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTK 825
            A+PS  M+C+E+W++E+  FL+G++   EL    I        I Y    G S AAS RV N LGAG +++A+                         +     FT  R+I+   A + P   +S +F+A+     GV RG G Q +   VN   +Y +G+P+ +   F   L V GLW G++     QA       ++  W K
Sbjct:  263 AVPSMLMLCMEWWAYEVGSFLSGILGMVELGAQSIVY--ELAIIVYMVPAGFSVAASVRVGNALGAGDMEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRDIINLVAQVVPIYAVSHLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIALMFATKLGVMGLWSGIIICTVFQAVCFLGFIIQLNWKK 464          
BLAST of CX047723 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.115e-21
Identity = 60/204 (29.41%), Postives = 92/204 (45.10%), Query Frame = -3
Query:  214 AMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNXXXXXXXXXXXXXXXXXXXXAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTK 825
            A+PS  M+C+E+W++E+  FL+G++   EL    I        I Y    G S AAS RV N LGAG +++A+                         +     FT  R+I+   A + P   +S +F+A+     GV RG G Q +   VN   +Y +G+P+ +   F   L V GLW G++     QA       ++  W K
Sbjct:  263 AIPSMLMLCMEWWAYEVGSFLSGILGMVELGAQSIVY--ELAIIVYMVPAGFSVAASVRVGNALGAGDMEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRDIINLVAQVVPIYAVSHLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIALMFATTLGVMGLWSGIIICTVFQAVCFLGFIIQLNWKK 464          
BLAST of CX047723 vs. ExPASy Swiss-Prot
Match: S47A2_HUMAN (Multidrug and toxin extrusion protein 2 OS=Homo sapiens GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 57/202 (28.22%), Postives = 91/202 (45.05%), Query Frame = -3
Query:  220 AMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNXXXXXXXXXXXXXXXXXXXXAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKW 825
            A+PS  M+C+E+W++EI  FL GL+   +LS   +   V T  + Y    GLS     RV   LGA    +AK                     +   N     FT+  +++   + + P   +  +F+A+  +  GV RG G Q     VN  T+Y IG+PL +L  F + + + GLW+G++  +     +    T R  W
Sbjct:  295 AVPSMLMICVEWWAYEIGSFLMGLLSVVDLSAQAVIYEVAT--VTYMIPLGLSIGVCVRVGMALGAADTVQAKRSAVSGVLSIVGISLVLGTLISILKNQLGHIFTNDEDVIALVSQVLPVYSVFHVFEAICCVYGGVLRGTGKQAFGAAVNAITYYIIGLPLGILLTFVVRMRIMGLWLGMLACVFLATAAFVAYTARLDW 494          
The following BLAST results are available for this feature:
BLAST of CX047723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TT12_ARATH2.827e-3036.00Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
YJ2D_SCHPO3.576e-2531.32Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
S47A1_RABIT5.164e-2431.37Multidrug and toxin extrusion protein 1 OS=Oryctol... [more]
S47A2_MOUSE1.150e-2331.71Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A1_DANRE4.371e-2331.86Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
S47A1_RAT1.837e-2132.02Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
S47A1_MOUSE2.399e-2129.90Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A1_PONAB9.115e-2129.41Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
S47A1_HUMAN9.115e-2129.41Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A2_HUMAN2.245e-1928.22Multidrug and toxin extrusion protein 2 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16B07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16B07-C13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047723 ID=CX047723; Name=CX047723; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTTTTTTTTTTTTATAGGGAACACATAGAGTGCAGTTTTTCCTCTA
TTATTTATTATAGTGGCGTGGTATTCCAATCCTTTCCAGCATGAAGTTCA
AAAAAAAAAGTTCATGGATTGAACAAAATGCACAACCTTCCTAATCCCAA
AATACAACAATAAGCTTAAATTGGACATGGCCCGTCTATTTCACTGCTCA
TTGCTACGTCCATTTTAGTCCACTTTCTTCGCAACGTAATCAGAAAGAGG
GAGCAGGCTTGGGATGCGAGGCCACAGACTAAGCCAATCCACAAACCCTT
AACATAAAGATTCAACTTAAATCCAAAAAGTAACGCAAGTGGCATTCCAA
TGAAATAGAATGTTGCCAAATTAACCCACACAGCCAAATGTTGCCAACCG
CATCCTCTTGCCACTCCTGATAAGATGGCCTGCATAGCATCAAATATTAT
TGAGATCACAATAAAGGGTGTCATTGAAGCAAATTCCTGAACTATTTCTC
GGCTGTCGGTGAAGAAGCTAGCCCAAATGTTATGGCCAAAAGCTAGAGCC
AAATCAATGATAAGAGCAAGGAGGACAACAAGCTTGAGAGTCACCGCCAT
GGCATTCTTAGCTCGATCGATCGTTCCTGCCCCCAATTCATTTGACACCC
TAGTGCTTGCAGCAGCACTGAGACCATAACTAAAGTTGTAGCAAATGGCT
TGTGTATTCACACACATTGCGATCAATGACGTAGAGAGTTCTGAGTTTGG
CATCAATCCAGCTAAGAACACAAGGATCTCAAAAGACCAGAACTCCAAGC
ATACCATTGCAGCAGATGGCATGGCTA
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