CX047722

Overview
NameCX047722
Unique NameCX047722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047722 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.598e-28
Identity = 76/238 (31.93%), Postives = 117/238 (49.16%), Query Frame = 2
Query:  119 LDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTXXXXXXXXXXXXXXLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGIFF*SFSVLLTNLKVAMPSA 832
            L V E+K     S   I+ +V  Y +  V+VMF GHLG LQLAGA++A        +    G++ A++T+CGQ +GA+QY  +GI  Q               L++Y+ PIL  + Q   I+ +  ++ + +IP ++AF       RFLQ Q+IV PL + S     +H  + + + +    G  GA L  S S W+      +YIL S     TW G    +F  +    K+ + SA
Sbjct:   47 LAVWESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASA 284          
BLAST of CX047722 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.005e-28
Identity = 72/212 (33.96%), Postives = 113/212 (53.30%), Query Frame = 2
Query:  146 VLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTXXXXXXXXXXXXXXLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLV--HWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGR-TWEG 772
            + F+ P++LT++  Y   + +V   GHLG+ +LA A+L+N  A +T FA  QG+  AL+T+  Q FG+  Y M+G+++Q               +W+  E IL+ L QDP     A  YM+ ++    A+   +   RFLQ Q I  P+ +  A+ + I+  + Y  V   W   GF GAP+A +++LW +   L IYI+  K  GR  W G
Sbjct:  101 IKFATPVVLTSLLQYGEVVTTVFSLGHLGKTELAAASLSNMTATITAFAIYQGIVSALDTVGTQSFGSGNYEMVGLHLQRILAILLLIQFPIFLIWWKIEGILLFLRQDPLTCMFAAKYMRVMMLASPAYALFEALKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWSPWVGFGFLGAPVAVALTLWSACAVLIIYIM--KVNGRQAWGG 310          
BLAST of CX047722 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.260e-24
Identity = 66/204 (32.35%), Postives = 101/204 (49.51%), Query Frame = 2
Query:  161 PMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTXXXXXXXXXXXXXXLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEG 772
            P+ ++ +  + I  VS +F GHLG+ +LAG  LA +   VTG +   GL+ A +TL  Q FG+   + +G+ +Q               L   TEPIL+ + Q PN++  + LY+K  +P L A    Q   R+LQ Q I+ P V   A    ++  I Y  +H   LG  G+  A +IS +   + L +YI        TW+G
Sbjct:   62 PVFISQLMIFLISFVSTVFCGHLGKTELAGVALAIAVINVTGISIGSGLASACDTLISQTFGSNNLKRVGVILQRGILILLLACFPCWALLINTEPILLAVRQSPNVASLSQLYVKIFMPALPAAFMYQLQGRYLQNQGIIWPQVITGAAGNILNALINYVFLHLLELGVAGSAAANTISQYSLAVFLYVYIRWKNLHKATWDG 265          
BLAST of CX047722 vs. ExPASy Swiss-Prot
Match: YAO6_SCHPO (Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe GN=SPAC11D3.06 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.973e-24
Identity = 68/214 (31.78%), Postives = 107/214 (50.00%), Query Frame = 2
Query:  131 EAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTXXXXXXXXXXXXXXLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEG 772
            E K  ++ S P+IL      ++   SV+  G LG  +L+ A  A  +A  TG+    G + A +TL    +GA + + LGI +QT              +W+Y++PILI LHQ P ++E +  +++YLIPG   +   +   +FLQTQ I     +   +   ++  + + LVH+  LG  GAPLA  +S W+S + L  Y     K    W G
Sbjct:    7 EVKYLLINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVAAFAYMFAMSTGWLIALGGTTAFDTLGSNLWGAGKKQELGILLQTGFIVLSILYLPICLVWWYSKPILIFLHQTPELAEASQKFLRYLIPGGLGYVCFELLKKFLQTQEITRAGSYILLVTSPLNVALNFLLVHYYGLGLKGAPLATGLSYWLSFILLTQYAK-YVKGAEAWNG 219          
BLAST of CX047722 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.973e-24
Identity = 71/233 (30.47%), Postives = 115/233 (49.36%), Query Frame = 2
Query:  131 EAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTXXXXXXXXXXXXXXLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGIFF*SFSVLLTNLKVAMPS 829
            EA   V  + P+ L  +  + I +VS +F GHLG+++L   TLA S   VTG +   GL+ A +TL  Q FG K  + +G+ +Q               ++  TE +L+LL QDP+++  A +Y+   IP L A    Q   R+LQ+Q I+MP V        ++ G+   L++   LG  G+  A + S +  +  L +Y+   +    TW G     F    +  ++A+PS
Sbjct:   43 EAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWTRECFQEWSSYTRLAIPS 275          
BLAST of CX047722 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.999e-23
Identity = 65/215 (30.23%), Postives = 107/215 (49.77%), Query Frame = 2
Query:  128 EEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTXXXXXXXXXXXXXXLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEG 772
            +EA+  +  + P  L+ +  + I +VS +F GHLG+++L   +LA +   +TG A   GL+GA +TL  Q FG    +++GI +Q               L   TE IL+L  QDP +S+   +Y+   +P L A    Q   ++LQ Q I+ P V    +    +    Y L++   LG  G+  A ++S +I  + L +YI+  +    TW G
Sbjct:   47 QEAQQLLALAAPAFLSQLMIFLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIVWRRLYADTWGG 261          
BLAST of CX047722 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.453e-23
Identity = 73/211 (34.60%), Postives = 107/211 (50.71%), Query Frame = 2
Query:  149 LFSL--PMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTXXXXXXXXXXXXXXLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFL-RFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEG 772
            LF+L  P+ L  V  + I +VS +F GHLG+++LA  TLA ++  V G +   GLS A +TL  Q FG+   + +G+ +Q               L+  T+ IL+L  QDP +S     Y+   IPGL    FL N L ++LQ Q I  P V    +   ++    Y+LV   +LG  G+  A  IS +  T+ L +YI+  K    TW G
Sbjct:   34 LFALSGPLFLFQVLTFMIYIVSTVFCGHLGKVELASVTLAVAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPEVSRLTQDYVMIFIPGLPVI-FLYNLLAKYLQNQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAG 243          
BLAST of CX047722 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.596e-23
Identity = 71/234 (30.34%), Postives = 113/234 (48.29%), Query Frame = 2
Query:  128 EEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTXXXXXXXXXXXXXXLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGIFF*SFSVLLTNLKVAMPS 829
            EE +  ++ + P  L  +  + I  +S +F GHLG+L+L   TLA +   VTG +   GLS A +TL  Q +G++  + +G+ +Q               L+  TE IL+L  QDP++S     Y+   IP L A       +++L  Q IV+P V        ++    Y  +H   LG  G+ LA +IS +   + L +YIL  K    TW G  +       + L++A+PS
Sbjct:   32 EELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYILWRKLHHATWGGWSWECLQDWASFLQLAIPS 265          
BLAST of CX047722 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22
Identity = 67/215 (31.16%), Postives = 104/215 (48.37%), Query Frame = 2
Query:  128 EEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTXXXXXXXXXXXXXXLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEG 772
            +EA+   + S P+ L  V  +   +V  +F GHLG+++LA  TL  ++  V G +   GLS A +TL  Q FG+   + +G+ +Q               L+  T+ IL+L  QDP +S     Y    IPGL A        ++LQ Q IV P V    +   ++    Y+LV   +LG  G+  A +IS ++    L ++I+  K    TWEG
Sbjct:   58 DEARALFVLSGPLFLFQVLNFLTYVVGTVFCGHLGKVELASVTLGVAFVNVCGVSVGAGLSSACDTLMSQSFGSPNKKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQDYAMIFIPGLPAIFLYSLLAKYLQNQGIVWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANTISQFVQAAFLFLHIVLKKLHLETWEG 272          
BLAST of CX047722 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.210e-22
Identity = 62/216 (28.70%), Postives = 102/216 (47.22%), Query Frame = 2
Query:  131 EAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTXXXXXXXXXXXXXXLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFG--GAPLACSISLWISTLSLAIYILCSKKTGRTWEG 772
            E  + +    P ++  +   +    +V   GHLG+  LA ++L+   A ++ F+  QG+  +L+TL  Q FGA +   + IY+Q               +W   E ILI LHQDP ++   G YM+  I     +   +   R+LQ Q I  P+ +       ++  + Y LV   ++GFG  GAP+A + + W  ++ L +YI C   T   W G
Sbjct:   90 ELSELLRLGSPTVIAYLLQSSEQFSTVFTLGHLGKEYLAASSLSTMTAAISAFSIFQGVISSLDTLATQAFGANKPYNVAIYLQRCLLILAVLHIPVALIWLNLEHILIFLHQDPMVAHLCGRYMRVFILAAPGYAVFEALKRYLQAQGIFTPITYVLCFAAPLNILLNYLLVWHPTIGFGFLGAPVAVATTFWFQSICLILYI-CFSSTPIPWPG 304          
The following BLAST results are available for this feature:
BLAST of CX047722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TT12_ARATH4.598e-2831.93Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
YJ2D_SCHPO6.005e-2833.96Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
S47A1_DANRE5.260e-2432.35Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
YAO6_SCHPO8.973e-2431.78Uncharacterized transporter C11D3.06 OS=Schizosacc... [more]
S47A2_MOUSE8.973e-2430.47Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A1_XENTR1.999e-2330.23Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A2_PONAB4.453e-2334.60Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]
S47A1_RAT7.596e-2330.34Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
S47A2_RABIT1.692e-2231.16Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]
YL47_SCHPO2.210e-2228.70Uncharacterized transporter C323.07c OS=Schizosacc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16B07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16B07-C13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047722 ID=CX047722; Name=CX047722; organism=Citrus sinensis; type=EST; length=835bp
GAATACAAGAAGTTCAGATAATCCCAAACTGCCTTTGTTAGGAAGCAGTG
ATGATGATATTAGTAACAGTCATGGAGAAGAAGAAGAAAGGAGGTGGTGG
CGGAAATGGAGGAAGGTTTTGGACGTGGAAGAGGCCAAGGATCAAGTCTT
GTTTTCGCTACCAATGATTCTGACAAATGTTTCTTACTATGCGATCCCTT
TGGTCTCTGTCATGTTTGCTGGTCACCTTGGTGAGCTTCAGCTCGCCGGT
GCAACTCTTGCCAACTCTTGGGCCTATGTCACTGGATTTGCTTTCACTCA
AGGACTAAGTGGAGCACTTGAAACACTCTGTGGTCAAGGATTTGGTGCAA
AGCAATACAGGATGTTGGGCATATATATGCAAACATCTTGTATCATATCT
TGCTTCTTCTCAATTATCATATCTTTCCTGTGGTTCTACACAGAACCTAT
ACTTATTTTACTTCATCAAGATCCGAATATTTCAGAACAAGCAGGTCTCT
ATATGAAGTATCTCATTCCGGGACTATTTGCATTCGGGTTTTTACAAAAC
TTTCTGAGGTTTCTTCAGACACAATCCATTGTCATGCCATTGGTCTTCTT
CTCAGCTCTCCCCTTGGCAATCCATTTTGGCATTGCATATTCTTTAGTTC
ATTGGACATCCCTTGGTTTCGGTGGAGCTCCTCTAGCATGTTCAATTTCG
TTGTGGATCTCGACACTTTCGCTTGCAATTTATATCCTTTGTTCAAAGAA
AACTGGGCGTACATGGGAAGGGATTTTCTTTTGATCATTCAGTGTCTTAC
TCACCAACTTGAAAGTAGCCATGCCATCTGCTGCA
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