CX047719

Overview
NameCX047719
Unique NameCX047719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSJ (Uncharacterized protein ycf72 OS=Oryza sativa subsp. japonica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.532e-41
Identity = 82/104 (78.85%), Postives = 87/104 (83.65%), Query Frame = -2 
Query:  499 STGFITTPLTTGRLPSQHLDPAPPKLFWFTPAFPTYPTVAEQFLDIKRTHPEGHFNVADFPSFAISFATAPAALANCPPFTSLLSMLCMDVPKGILGEVDSSCL 810
            STGFITTPLTTGRLPSQHLDPA PKLFWFTP  PT PTVA+QF D KRT P+G+  VAD PSFAISFATAPAALANCPP   ++SMLCM VPKGI  EVDSS L
Sbjct:   13 STGFITTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSFL 116
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSI (Uncharacterized protein ycf72 OS=Oryza sativa subsp. indica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.532e-41
Identity = 82/104 (78.85%), Postives = 87/104 (83.65%), Query Frame = -2 
Query:  499 STGFITTPLTTGRLPSQHLDPAPPKLFWFTPAFPTYPTVAEQFLDIKRTHPEGHFNVADFPSFAISFATAPAALANCPPFTSLLSMLCMDVPKGILGEVDSSCL 810
            STGFITTPLTTGRLPSQHLDPA PKLFWFTP  PT PTVA+QF D KRT P+G+  VAD PSFAISFATAPAALANCPP   ++SMLCM VPKGI  EVDSS L
Sbjct:   13 STGFITTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSFL 116
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSA (Uncharacterized protein ycf72 OS=Oryza sativa GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.532e-41
Identity = 82/104 (78.85%), Postives = 87/104 (83.65%), Query Frame = -2 
Query:  499 STGFITTPLTTGRLPSQHLDPAPPKLFWFTPAFPTYPTVAEQFLDIKRTHPEGHFNVADFPSFAISFATAPAALANCPPFTSLLSMLCMDVPKGILGEVDSSCL 810
            STGFITTPLTTGRLPSQHLDPA PKLFWFTP  PT PTVA+QF D KRT P+G+  VAD PSFAISFATAPAALANCPP   ++SMLCM VPKGI  EVDSS L
Sbjct:   13 STGFITTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSFL 116
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: YCF72_ORYNI (Uncharacterized protein ycf72 OS=Oryza nivara GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.532e-41
Identity = 82/104 (78.85%), Postives = 87/104 (83.65%), Query Frame = -2 
Query:  499 STGFITTPLTTGRLPSQHLDPAPPKLFWFTPAFPTYPTVAEQFLDIKRTHPEGHFNVADFPSFAISFATAPAALANCPPFTSLLSMLCMDVPKGILGEVDSSCL 810
            STGFITTPLTTGRLPSQHLDPA PKLFWFTP  PT PTVA+QF D KRT P+G+  VAD PSFAISFATAPAALANCPP   ++SMLCM VPKGI  EVDSS L
Sbjct:   13 STGFITTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSFL 116
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.731e-41
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 2 
Query:  524 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGNAGVNQKSLG AGSKCWLGKRPVVRGVVMNPVD
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVD 227
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.731e-41
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 2 
Query:  518 SPNMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            S +MPLGT+IHNIE  L +GGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGNAGVNQKSLG AGSKCWLGKRPVVRGVVMNPVD
Sbjct:  131 STDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVD 228
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: YCF72_SACOF (Uncharacterized protein ycf72 OS=Saccharum officinarum GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.722e-40
Identity = 81/104 (77.88%), Postives = 87/104 (83.65%), Query Frame = -2 
Query:  499 STGFITTPLTTGRLPSQHLDPAPPKLFWFTPAFPTYPTVAEQFLDIKRTHPEGHFNVADFPSFAISFATAPAALANCPPFTSLLSMLCMDVPKGILGEVDSSCL 810
            STGFITTPLTTGRLPSQHLDPA PKLFWFTP  PT PTVA+QF D KRT P+G+  VA+ PSFAISFATAPAALANCPP   ++SMLCM VPKGI  EVDSS L
Sbjct:   13 STGFITTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSFL 116
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: YCF72_SACHY (Uncharacterized protein ycf72 OS=Saccharum hybrid GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.722e-40
Identity = 81/104 (77.88%), Postives = 87/104 (83.65%), Query Frame = -2 
Query:  499 STGFITTPLTTGRLPSQHLDPAPPKLFWFTPAFPTYPTVAEQFLDIKRTHPEGHFNVADFPSFAISFATAPAALANCPPFTSLLSMLCMDVPKGILGEVDSSCL 810
            STGFITTPLTTGRLPSQHLDPA PKLFWFTP  PT PTVA+QF D KRT P+G+  VA+ PSFAISFATAPAALANCPP   ++SMLCM VPKGI  EVDSS L
Sbjct:   13 STGFITTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSFL 116
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.722e-40
Identity = 86/96 (89.58%), Postives = 89/96 (92.71%), Query Frame = 2 
Query:  524 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            +MPLGT+IHNIE  L +GGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGNAGVNQKSLG AGSKCWLGKRPVVRGVVMNPVD
Sbjct:  132 DMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVD 227
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.722e-40
Identity = 86/96 (89.58%), Postives = 89/96 (92.71%), Query Frame = 2 
Query:  524 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            +MPLGT+IHNIE  L +GGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGNAGVNQKSLG AGSKCWLGKRPVVRGVVMNPVD
Sbjct:  132 DMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVD 227
The following BLAST results are available for this feature:
BLAST of CX047719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YCF72_ORYSJ4.532e-4178.85Uncharacterized protein ycf72 OS=Oryza sativa subs... [more]
YCF72_ORYSI4.532e-4178.85Uncharacterized protein ycf72 OS=Oryza sativa subs... [more]
YCF72_ORYSA4.532e-4178.85Uncharacterized protein ycf72 OS=Oryza sativa GN=y... [more]
YCF72_ORYNI4.532e-4178.85Uncharacterized protein ycf72 OS=Oryza nivara GN=y... [more]
RK2_CUCSA7.731e-4190.6350S ribosomal protein L2, chloroplastic OS=Cucumis... [more]
RK2A_POPAL7.731e-4188.7850S ribosomal protein L2-A, chloroplastic OS=Popul... [more]
YCF72_SACOF1.722e-4077.88Uncharacterized protein ycf72 OS=Saccharum officin... [more]
YCF72_SACHY1.722e-4077.88Uncharacterized protein ycf72 OS=Saccharum hybrid ... [more]
RK2_POPTR1.722e-4089.5850S ribosomal protein L2, chloroplastic OS=Populus... [more]
RK2B_POPAL1.722e-4089.5850S ribosomal protein L2-B, chloroplastic OS=Popul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16B03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16B03-C5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047719 ID=CX047719; Name=CX047719; organism=Citrus sinensis; type=EST; length=814bp
GAAAGGTGCGGATCTCCGCCATCCTTGCTCAGGCTTTTGCGCGATTGGGC
GATGAGGGTTTTGTCTCATCTACCTGATGGTACTTTTCATCACGCGACTC
TTGCGAGACATCTTCTTTTTTAGAAATTTATTCTTCAGGCCGCTACCGAT
TCTCTTCCAGTTGTTCTCACTCCGGGTCTTTTGGAGGTTTGGTAACAACT
TGACTGAGTCATGGGTGTGGTTACTAGTACAAGCCCCTTTCAGTGATCCA
GGTTTGGGAAGCGAGAAGAAGGCGAACATAGTATGGTTTACCTGTGGGCG
GCCGCTCGGGTTCTACAGCTCTTGGCCTACGTTCACACTTACGCTTCATA
TGCTGGTGTGGCTGTCGGCTGACTGAGAGGGTGGGTGTATCCGCGAGGAC
GCTTTATAAACTCCGCGGCTTGGTCATTGCCGACCAAGCTACAGAGTACT
GAAACATCTGTGCTCAATGGGAGTGAAGGATCTTTTTGATCAATCAAAAA
GACAAGACGAATCTACTTCACCCAATATGCCCTTAGGCACGTCCATACAT
AACATAGAAAGAAGACTAGTAAAGGGTGGACAATTAGCTAGAGCAGCGGG
TGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAAT
GACCTTCTGGGTGGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTC
GGATAAGTGGGGAATGCTGGGGTGAACCAGAAAAGTTTGGGTGGAGCCGG
ATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGA
ACCCTGTAGACCCC
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