FC921973

Overview
NameFC921973
Unique NameFC921973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length220
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1574 contig Csv1_Contig1574:1484..1703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921973 vs. ExPASy Swiss-Prot
Match: AROF_TOBAC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.639e-26
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = -3
Query:   33 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISSEQPL 218
            LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR+ S+  L
Sbjct:  479 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRLGSQNVL 540          
BLAST of FC921973 vs. ExPASy Swiss-Prot
Match: AROG_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.795e-26
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = -3
Query:   33 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISSEQPL 218
            LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLEL+FIIAERLRKRR+ S+  L
Sbjct:  478 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKRRLGSQSTL 539          
BLAST of FC921973 vs. ExPASy Swiss-Prot
Match: AROF_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum GN=SHKA PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.227e-26
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = -3
Query:   42 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISSE 218
            LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLEL+FIIAERLRKRR+ S+
Sbjct:  478 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKRRLGSQ 536          
BLAST of FC921973 vs. ExPASy Swiss-Prot
Match: AROF_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.387e-25
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = -3
Query:   39 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISSEQ 218
            LEMTGQNVTECIGGSRTVT+DDLSSRYHTHCDPRLNASQSLELAFI+AERLRKRR  S++
Sbjct:  464 LEMTGQNVTECIGGSRTVTYDDLSSRYHTHCDPRLNASQSLELAFIVAERLRKRRTGSQR 523          
BLAST of FC921973 vs. ExPASy Swiss-Prot
Match: AROF_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.036e-25
Identity = 52/60 (86.67%), Postives = 59/60 (98.33%), Query Frame = -3
Query:   39 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISSEQ 218
            LEMTGQNVTECIGGSRTVT+DDL SRYHTHCDPRLNASQSLEL+FI+AERLR+RR+SS++
Sbjct:  451 LEMTGQNVTECIGGSRTVTYDDLGSRYHTHCDPRLNASQSLELSFIVAERLRRRRMSSQR 510          
BLAST of FC921973 vs. ExPASy Swiss-Prot
Match: AROG_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.272e-25
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = -3
Query:   45 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISS 218
            LEMTGQNVTECIGGSRTVTFDDLS RYHTHCDPRLNASQSLELAFIIAERLR+RR+ S
Sbjct:  469 LEMTGQNVTECIGGSRTVTFDDLSDRYHTHCDPRLNASQSLELAFIIAERLRRRRMRS 526          
BLAST of FC921973 vs. ExPASy Swiss-Prot
Match: AROG_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.885e-25
Identity = 52/58 (89.66%), Postives = 57/58 (98.28%), Query Frame = -3
Query:   45 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISS 218
            LEMTGQNVTEC+GGSRT+T++DLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR+ S
Sbjct:  441 LEMTGQNVTECVGGSRTITYNDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRLGS 498          
BLAST of FC921973 vs. ExPASy Swiss-Prot
Match: AROG_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.992e-25
Identity = 51/60 (85.00%), Postives = 59/60 (98.33%), Query Frame = -3
Query:   39 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISSEQ 218
            LEMTGQNVTECIGGSRTVT+DDL SRYHTHCDPRLNASQSLEL+FI+AERLR+RR+S+++
Sbjct:  451 LEMTGQNVTECIGGSRTVTYDDLGSRYHTHCDPRLNASQSLELSFIVAERLRRRRMSTQR 510          
BLAST of FC921973 vs. ExPASy Swiss-Prot
Match: AROF_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS1 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.616e-24
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = -3
Query:   39 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISSEQ 218
            LEMTGQNVTECIGGSRTVTFDDL  RYHTHCDPRLNASQSLEL+FIIAERLR++RI S +
Sbjct:  483 LEMTGQNVTECIGGSRTVTFDDLGDRYHTHCDPRLNASQSLELSFIIAERLRRKRIRSSK 542          
BLAST of FC921973 vs. ExPASy Swiss-Prot
Match: AROF_CATRO (Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.816e-17
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = -3
Query:   60 TECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK 194
            TEC+GGSRT+T+DD  +RYHTHCDPRLNASQSLELAFIIAERLRK
Sbjct:  439 TECVGGSRTITYDDRQTRYHTHCDPRLNASQSLELAFIIAERLRK 483          
The following BLAST results are available for this feature:
BLAST of FC921973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AROF_TOBAC1.639e-2691.94Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_SOLLC2.795e-2690.32Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_SOLTU6.227e-2693.22Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_ARATH1.387e-2590.00Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_SOLLC4.036e-2586.67Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_ORYSJ5.272e-2593.10Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROG_ARATH6.885e-2589.66Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROG_SOLTU8.992e-2585.00Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_ORYSJ2.616e-2486.67Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_CATRO1.816e-1786.67Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]

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Properties
Property NameValue
Genbank descriptionC06056B03T7 RindPdigS Citrus sinensis cDNA clone C06056B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921973 ID=FC921973; Name=FC921973; organism=Citrus sinensis; type=EST; length=220bp
CTCGGGCCATTCTACAGGAGAGAAGAAGAGGCAAGAGGTTGCTCTGAGCT
AATCCTCCTCTTTCTGAGCCGCTCGGCAATGATGAAGGCAAGCTCAAGTG
ACTGTGAAGCATTGAGCCTAGGGTCACAGTGGGTGTGGTAGCGTGAACTC
AAGTCGTCGAATGTCACTGTTCTTGACCCACCGATGCACTCTGTCACATT
CTGGCCTGTCATCTCCAAAT
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