CX047695

Overview
NameCX047695
Unique NameCX047695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047695 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.143e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 2
Query:    2 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 307
            FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL
Sbjct:  244 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345          
BLAST of CX047695 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.367e-46
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 2
Query:    2 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 307
            FGATGVK L+SIGMI+ VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELIL
Sbjct:  240 FGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341          
BLAST of CX047695 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.861e-44
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 2
Query:    2 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 307
            FGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+L
Sbjct:  237 FGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338          
BLAST of CX047695 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.121e-40
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 2
Query:    2 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 307
            FGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++
Sbjct:  243 FGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344          
BLAST of CX047695 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.258e-40
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 2
Query:    2 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 274
            FGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT
Sbjct:  240 FGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330          
BLAST of CX047695 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 54/79 (68.35%), Postives = 66/79 (83.54%), Query Frame = 2
Query:    5 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 241
            GA  VKRL S+G IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  235 GAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CX047695 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.390e-21
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 2
Query:    5 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 241
            GA  VKRL S+  IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  231 GAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CX047695 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:    2 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 241
            FGA   KRL S+G ++++ GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  237 FGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of CX047695 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 2
Query:    2 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 283
            FGA  VKR+ S G+ E +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  242 FGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of CX047695 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 2
Query:    2 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 280
            FGA  VKRL S  ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  236 FGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
The following BLAST results are available for this feature:
BLAST of CX047695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
THI4_CITSI3.143e-51100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.367e-4690.20Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH4.861e-4487.25Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE1.121e-4082.35Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE4.258e-4090.11Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH2.347e-2268.35Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX3.390e-2167.09Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR5.782e-2163.75Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_UROFA1.682e-2053.19Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO1.424e-1955.91Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16A01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16A01-A1-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047695 ID=CX047695; Name=CX047695; organism=Citrus sinensis; type=EST; length=739bp
TTTTGGGGCCACTGGAGTAAAGAGGTTGAAGAGTATCGGAATGATTGAGG
AAGTGCCTGGAATGAAGGCACTGGACATGAACTCTGCAGAAGATGCTATT
GTGAGGCTGACCAGGGAGGTTGTGCCTGGTATGATAGTTACCGGCATGGA
AGTTGCCGAGATTGATGGTGCTCCTCGAATGGGGCCAACATTTGGAGCAA
TGATGATATCGGGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCACTGGGC
CAGCCGAATGCATTAGACGGTACATATGTGGGAGGCGTTCACCCTGAGCT
GATCTTAGCTGCAGCTGATTCTGCTGAGACTGCTGATGCTTAATTTGGTA
ATAACAGGCATCATCACTCATCAGCTGTGTGCATGCAAATAAACTCTGGC
AAAAAAGTAGTTGTATTTAGGTGGTTGTGATGGATGGTTGATGCGAATAA
TGAGATAATGTTGTGAGGTTTTGTGAATAAAGTGTTTGTTTCCGGTCCAT
CATGGAACCTTTAATTTTAATTTCTTTCTCCTCTTGTAAGAAACCGTTGT
GAGTTTTTCGGAGGTGAATTTGCAGTTGCGTATCTAGTCCTTGTTATCTG
TGTTATGTGTAAGACTGCCCTTGGGCTGTTCCCTTTTCTTTGCTTTGTAT
GTTTATAACTTGAGGCATCAGCCAATGGGAAAGTGCTGATGTGATTAAGA
TCAATGATGAAGATCTGAGCTTAAAAAAAAAAAAAACCT
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