CX047689

Overview
NameCX047689
Unique NameCX047689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047689 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.220e-22
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 3 
Query:   21 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYD 347
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYD
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYD 98

HSP 2 Score: 27.335 bits (59), Expect = 2.220e-22
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2 
Query:  434 LYSGETRSKHH 466
            +YSGETRSKHH
Sbjct:  100 MYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CX047689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN2.220e-2249.54Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_15H10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15H10-P20-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047689 ID=CX047689; Name=CX047689; organism=Citrus sinensis; type=EST; length=864bp
GCTAAATTGTAAATTTAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTG
GCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCAC
AACACCCTTAGCAGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCA
AGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACG
CCAGTGACGCCGACGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAG
GAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAG
AGGTCTTTGACAAGCCCACACATCCTAACTCTCCCACTGTTTATGACTGC
AACCAAATAAAGGCTAAGAGGAAGGAGGAAAACGTGGCACTCTGTCTCAT
GGGCGCGTTGAAATAGATCTTTGTCTTATTCAGCTTTACAGTGGGGAGAC
TAGGAGCAAGCATCATCACTGAGTGGATGATACGCTCCAGCGATGTAAAT
GAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTGTAGA
TAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTGTTAA
TGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAATGC
TGCTGACTAAAAGTAAACTAAAGACTGTGATGTTTTTATATCATATAATT
TAATAATTGTATGTGATGTGAGGATTGCTAAGCTGTGGGCGGAGATGAAA
GGTTGCTGGTTTTTGGGTTTAGGACATGTTTTTGATTGTCATTTTGTAAG
AGCCAAGATCATCCCTTCGTGGACGGTCGTGATGAGCATATATGTTTTAT
TATTAATAAATAAG
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