CX047685

Overview
NameCX047685
Unique NameCX047685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047685 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.449e-50
Identity = 90/147 (61.22%), Postives = 113/147 (76.87%), Query Frame = -3
Query:  304 TNAYKYLIATGGLEEESSYPYIGKRGKCQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAIFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRG---RGMCGMNTM 735
            T A+ YL   GGLE E  YPY G  GKC+FD  KI   V NF+ + VDE QI+A+L+ HGPLAIG+NA +MQTYIGGVSCP ICG+  L+HGVLLVGYGA GF+ +RL ++PYWIIKNSWG+ WG++GYY++CRG   R  CG+++M
Sbjct:  214 TTAFSYLQKAGGLESEKDYPYTGSDGKCKFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGINAAYMQTYIGGVSCPYICGRH-LDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSM 359          
BLAST of CX047685 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.038e-46
Identity = 83/144 (57.64%), Postives = 113/144 (78.47%), Query Frame = -3
Query:  304 NAYKYLIATGGLEEESSYPYIGKRGK-CQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAIFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRGRGMCGMNTM 732
            +A++Y + TGGL +E  YPY GK GK C+ D  KI   V+NF+ I +DE QIAA+LV +GPLA+ +NA +MQTYIGGVSCP IC ++ LNHGVLLVGYGA G++  R   +PYWIIKNSWG+ WG++G+Y++C+GR +CG+++M
Sbjct:  213 SAFEYTLKTGGLMKEEDYPYTGKDGKTCKLDKSKIVASVSNFSVISIDEEQIAANLVKNGPLAVAINAGYMQTYIGGVSCPYICTRR-LNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKGRNICGVDSM 355          
BLAST of CX047685 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46
Identity = 76/143 (53.15%), Postives = 111/143 (77.62%), Query Frame = -3
Query:  304 NAYKYLIATGGLEEESSYPYIGKRGKCQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAIFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRGRGMCGMNTM 732
            NA++YL+ +GG+ +E  Y Y G+ G C+FD  K+   V+NF+ + +DE+QIAA+LV +GPLA+ +NA +MQTY+ GVSCP +C K  L+HGVLLVG+G   ++ +RL  +PYWIIKNSWG+ WG+ GYY++CRGR +CG+++M
Sbjct:  210 NAFEYLLESGGVVQEKDYAYTGRDGSCKFDKSKVVASVSNFSVVTLDEDQIAANLVKNGPLAVAINAAWMQTYMSGVSCPYVCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSM 352          
BLAST of CX047685 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.148e-45
Identity = 79/144 (54.86%), Postives = 112/144 (77.78%), Query Frame = -3
Query:  304 NAYKYLIATGGLEEESSYPYIGKRG-KCQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAIFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRGRGMCGMNTM 732
            +A++Y + TGGL  E  YPY G  G  C+ D  KI   V+NF+ + ++E+QIAA+L+ +GPLA+ +NA +MQTYIGGVSCP IC ++ LNHGVLLVGYG+ GFS  RL  +PYWIIKNSWG+ WG++G+Y++C+GR +CG++++
Sbjct:  210 SAFEYTLKTGGLMREKDYPYTGTDGGSCKLDRSKIVASVSNFSVVSINEDQIAANLIKNGPLAVAINAAYMQTYIGGVSCPYICSRR-LNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKGRNICGVDSL 352          
BLAST of CX047685 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.115e-32
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  310 NAYKYLIATGGLEEESSYPYIGKRG-KCQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAIFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRGRGMCGMN 732
            NAY Y+I  GG++ ESSYPY  + G +C F+S  I  +++NFT IP +E  +A ++V  GPLAI  +A+  Q YIGGV   + C    L+HG+L+VGY AK  +I R  N PYWI+KNSWG  WG+ GY  L RG+  CG++
Sbjct:  197 NAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVF-DIPCNPNSLDHGILIVGYSAKN-TIFRK-NMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVS 335          
BLAST of CX047685 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.532e-32
Identity = 63/146 (43.15%), Postives = 95/146 (65.07%), Query Frame = -3
Query:  304 TNAYKYLIATGGLEEESSYPYIGKRGKCQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAIFMQTYIGGVSCP--LICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRGRGMCGMNTM 735
            +NAY+ +I  GGL  E +YPY  K  KC   ++ +AV + +  N+  DE ++AA L H+  +++G+NA+ +Q Y  G+S P  + C K  L+H VLLVGYG          N+P+WI+KNSWG +WG++GY+R+ RG G CG+NT+
Sbjct:  173 SNAYESIIKMGGLMLEDNYPYDAKNEKCHLKTDGVAVYINSSVNLTQDETELAAWLYHNSTISVGMNALLLQFYQHGISHPWWIFCSKYLLDHAVLLVGYGVSE------KNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGINTV 312          
BLAST of CX047685 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.683e-31
Identity = 54/85 (63.53%), Postives = 74/85 (87.06%), Query Frame = -3
Query:  304 GPLAIGLNAIFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRGRGMCGMNTM 558
            GPLA+ +NA +MQTYIGGVSCP IC ++ LNHGVLLVGYG+ G++ +RL  +PYW+IKNSWG+ WG++GYY++CRGR +CG+++M
Sbjct:    1 GPLAVAINAAYMQTYIGGVSCPYICSRR-LNHGVLLVGYGSAGYAPIRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVDSM 84          
BLAST of CX047685 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.116e-31
Identity = 68/146 (46.58%), Postives = 93/146 (63.70%), Query Frame = -3
Query:  304 NAYKYLIATGGLEEESSYPYIGKRGKCQFDSEKIAVRVANFTNIPV-DENQIAAHLVHHGPLAIGLNAIFMQTYIGGVSCP--LICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRGRGMCGMNTM 732
            NAYK +   GGLE E+ YPY  K+ +C F+     V+VA F ++P  +E  +   L+ +GP++IG+NA  MQ Y GGVS P   +C KK L+HGVL+VGYG   +        PYWI+KNSWG +WG+ GYYR+ RG   CG++ M
Sbjct:  463 NAYKAIKDIGGLEYEAEYPYKAKKNQCHFNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDYPNFHK-TLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSEM 607          
BLAST of CX047685 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.080e-27
Identity = 62/146 (42.47%), Postives = 84/146 (57.53%), Query Frame = -3
Query:  304 TNAYKYLIATGGLEEESSYPYIGKRGKCQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAIFMQTYIGGVSCPL--ICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRGRGMCGMNTM 735
            +NAY  +   GGLE E  Y Y G    C F ++   V + +   +  +EN+IAA L   GP+++ +NA  MQ Y  G++ P   +C   +++H VLLVGYG +        N PYW IKNSWG  WG+ GYY L RG G CG+NTM
Sbjct:  317 SNAYAAIKNLGGLETEDDYGYQGHVQTCNFSAQMAKVYINDSVELSRNENKIAAWLAQKGPISVAINAFGMQFYRHGIAHPFRPLCSPWFIDHAVLLVGYGNRS-------NIPYWAIKNSWGSDWGEEGYYYLYRGSGACGVNTM 455          
BLAST of CX047685 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.080e-27
Identity = 62/146 (42.47%), Postives = 84/146 (57.53%), Query Frame = -3
Query:  304 TNAYKYLIATGGLEEESSYPYIGKRGKCQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAIFMQTYIGGVSCPL--ICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRGRGMCGMNTM 735
            +NAY  +   GGLE E  Y Y G    C F +EK  V + +   +  +E ++AA L   GP+++ +NA  MQ Y  G+S PL  +C    ++H VLLVGYG +        + P+W IKNSWG  WG+ GYY L RG G CG+NTM
Sbjct:  339 SNAYSAIKNLGGLETEDDYSYQGHMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNR-------SDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTM 477          
The following BLAST results are available for this feature:
BLAST of CX047685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CYSP1_MAIZE3.449e-5061.22Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
RD19A_ARATH1.038e-4657.64Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
CYSP_PEA1.356e-4653.15Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
A494_ARATH1.148e-4554.86Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CYSP1_DICDI1.115e-3248.59Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CATL_SCHMA5.532e-3243.15Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
PAPA5_CARPA4.683e-3163.53Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
CPR1_DROME6.116e-3146.58Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CATF_MOUSE1.080e-2742.47Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CATF_HUMAN1.080e-2742.47Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15H08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15H08-P16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047685 ID=CX047685; Name=CX047685; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTGCAACAGAAATTAAGGATAAAATATACCCAAAA
TACTTTCTGGAAGACACAATAGTATGTAGAAAAGCAGGTCTGAAAAGCAT
TTTCGAGTCTAATCCAGAACTTACTTGAGAAAGGGGAATTATGAAACCGG
AAAAGCTTCAATAATTAGAAGATCACAAACAAGAACAAAAGGGAAACTAG
CTACCATATAACATGAGCTGTCTATATTGCTTTCTGTAGATATTCCAACT
TAATAAGAGGGACTTCAAGTTTAGGAGGAGACTTGAGTGACCACTGCAGA
AACCATGGTGTTCATTCCACACATGCCACGCCCTCGGCAGAGCCGGTAAT
ACCCATGGTCTCCCCATTGCTTGCCCCACGAATTCTTGATGATCCAATAC
GGCTGGTTTCCAAGCCTAAGAATTGAGAAGCCCTTGGCACCATACCCGAC
GAGCAGAACGCCGTGGTTGAGCCATTTCTTGCCGCAGATTAGCGGGCATG
AGACTCCCCCAATGTATGTTTGCATGAATATAGCGTTCAACCCAATAGCC
AGAGGACCGTGGTGGACTAAATGTGCAGCAATTTGGTTCTCATCGACAGG
AATATTGGTAAAATTTGCAACTCGAACGGCTATTTTCTCTGAATCGAATT
GGCATTTGCCACGCTTCCCAATATAAGGATATGAACTCTCCTCTTCTAGC
CCTCCAGTCGCGATCAAATATTTGTATGCATTTGTCA
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