CX047679

Overview
NameCX047679
Unique NameCX047679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047679 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.045e-18
Identity = 49/160 (30.63%), Postives = 94/160 (58.75%), Query Frame = -3
Query:  268 NNFVRDACSVTTYRDLCIHSLAPFSKSARNSPGKWARAGVSVTIGEVKNVTQFLYKLKRRNLMRGRNRLALLDCIECFQETIDELHMSLGILRRLS---AREFDRQMDDLTTFVSAALTYEDTCLDGF--EGQKATQVDLLKKRVLKTTYLASNALALIN 732
            N F++ +C++TTY  +C  SL+ ++K+ +N+P + A   + V++   +    F+ +L +   ++ R   A+ DC+E  ++++D +  S   ++ LS     +F  +M ++ T+VSAALT E TC+DGF  +G      + ++ +V+    + SNALAL+N
Sbjct:   26 NQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVN 185          
BLAST of CX047679 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.844e-15
Identity = 52/168 (30.95%), Postives = 89/168 (52.98%), Query Frame = -3
Query:  271 SGESASGNRNNFVRDACSVTTYRDLCIHSLAPFSKSARN--SPGKWARAGVSVTIGEVKNVTQFLYKLKRRNLMRGRNRLALLDCIECFQETIDELHMSLGILRRL-SAREFDRQMDDLTTFVSAALTYEDTCLDGFEGQKATQ--VDLLKKRVLKTTYLASNALALI 759
            SG++ +   +  ++ +CS T Y DLC  ++A   ++++   S        +++T   V++    + KL +R  +  R ++AL DC+E   ET+DELH ++  L    + +   +  DDL T +SAA+T + TCLDGF    A +   D L    +    + SNALA+I
Sbjct:   57 SGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of CX047679 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.844e-15
Identity = 52/168 (30.95%), Postives = 89/168 (52.98%), Query Frame = -3
Query:  271 SGESASGNRNNFVRDACSVTTYRDLCIHSLAPFSKSARN--SPGKWARAGVSVTIGEVKNVTQFLYKLKRRNLMRGRNRLALLDCIECFQETIDELHMSLGILRRL-SAREFDRQMDDLTTFVSAALTYEDTCLDGFEGQKATQ--VDLLKKRVLKTTYLASNALALI 759
            SG++ +   +  ++ +CS T Y DLC  ++A   ++++   S        +++T   V++    + KL +R  +  R ++AL DC+E   ET+DELH ++  L    + +   +  DDL T +SAA+T + TCLDGF    A +   D L    +    + SNALA+I
Sbjct:   57 SGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of CX047679 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.039e-14
Identity = 56/170 (32.94%), Postives = 91/170 (53.53%), Query Frame = -3
Query:  271 AKSGESASGNRNNFVRDACSVTTYRDLCIHSLAPFSKSARNSPGKWARAGVSVTIGEVKNVTQFLYKL-KRRNLMRGRNRLALLDCIECFQETIDELHMSLGILRRLSAREFDRQ-MDDLTTFVSAALTYEDTCLDGF---EGQKATQVDLLKKRVLKTTYLASNALALI 765
            A    + S + +  +R +CS T Y +LCI ++         S      A V++TI  V++    + KL K+R  +  R + AL DC+E   ET+DELH ++  L     ++  R+   DL T +S+A+T ++TCLDGF   +  K  +  LLK ++    ++ SNALA+I
Sbjct:   45 ANEKRTLSPSSHAVLRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQI-HVEHMCSNALAMI 213          
BLAST of CX047679 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 52/163 (31.90%), Postives = 85/163 (52.15%), Query Frame = -3
Query:  271 SGNRNNFVRDACSVTTYRDLCIHSLAPFSKSARNSPGKWARAGVSVTIGEVKNVTQFLYKL-KRRNLMRGRNRLALLDCIECFQETIDELHMSLGILRRL-SAREFDRQMDDLTTFVSAALTYEDTCLDGF---EGQKATQVDLLKKRVLKTTYLASNALALI 744
            S   +  ++  CS T Y +LC  ++A        S  +   A +++T   VK+    + KL  +R  +  R   AL DC+E   ET+DELH+++  L +    +   +  DDL T +S+A+T + TCLDGF   +  +  +  LLK +V    ++ SNALA+I
Sbjct:   55 SSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQV-HVEHMCSNALAMI 216          
BLAST of CX047679 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.565e-13
Identity = 57/168 (33.93%), Postives = 90/168 (53.57%), Query Frame = -3
Query:  271 SGNRNNFVRDACSVTTYRDLC---IHSLAPFSKSARNSPGKWARAGVSVTIGEVK-NVTQFLYKLKRRNLMRGRNRLALLDCIECFQETIDELHMSLGILRRL-SAREFDRQMDDLTTFVSAALTYEDTCLDGF---EGQKATQVDLLK--KRVLKTTYLASNALALI 744
            S + +  V+ ACS T + +LC   I +++ FSK    S        +++T+  V+ N       +K R  +  R ++AL DC+E   ET+DELH ++  L    + +     ++DL T +S+A+T ++TCLDGF   E  K  +  LLK  K V K   + SNALA+I
Sbjct:   59 SSSAHAIVKSACSNTLHPELCYSAIVNVSDFSKKV-TSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEK---MCSNALAMI 222          
BLAST of CX047679 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 44/156 (28.21%), Postives = 82/156 (52.56%), Query Frame = -3
Query:  265 VRDACSVTTYRDLCIHSLAPFSKSARNSPGKWARAGVSVTIGEVKNV---TQFLYKLKRRNLMRGRNRLALLDCIECFQETIDELHMSLGILRRLSAREFDRQMDDLTTFVSAALTYEDTCLDGFEGQKATQVDLLKKRVLKTTYLASNALALINK 723
            V+D C+ T YR  C  +L    K+  + P +  +   +VT+ ++ +    +Q + +L++ +    R R+AL  C E     +DEL  S   L +      D  + +L  ++SAA+++E+TCL+GF+G +    + +KK +     L  N LA+I++
Sbjct:   58 VKDVCAPTDYRKTCEDTLIKNGKNTTD-PMELVKTAFNVTMKQITDAAKKSQTIMELQKDS----RTRMALDQCKELMDYALDELSNSFEELGKFEFHLLDEALINLRIWLSAAISHEETCLEGFQGTQGNAGETMKKALKTAIELTHNGLAIISE 208          
The following BLAST results are available for this feature:
BLAST of CX047679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
21KD_DAUCA1.045e-1830.6321 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME3_CITSI1.844e-1530.95Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI1.844e-1530.95Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME3_ARATH2.039e-1432.94Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME2_ARATH2.254e-1331.90Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PMEU1_SOLLC8.565e-1333.93Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME21_ARATH1.237e-1128.21Probable pectinesterase/pectinesterase inhibitor 2... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_15H04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15H04-P8-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047679 ID=CX047679; Name=CX047679; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTCATGAAACTTGAAATTTATTTGTTTTACAACAGATATAC
ACAATAGGAAGATTAAATTAAAGCTAGTTGAGTACACACTAAAGAGAAAC
AAGTAGCCCGATCTCTACTAGTTTTATTGTTTCATGCCATCACCTCTGCC
TCTCAGCACGCAGCTTAATTGAAGAGCGTATCATGTAAACACACACACAC
ACACACACACACACACATATTATGGATCGGCAAGGGCAAGGCTTTCCAAA
CTCGTGGTTGCAAGTTTGTTAATAAGAGCCAGAGCATTGCTTGCTAAATA
AGTTGTTTTCAAAACTCGTTTTTTAAGCAAATCTACTTGCGTTGCCTTTT
GCCCTTCAAAACCATCCAAGCAAGTGTCCTCATAAGTCAGTGCAGCGCTC
ACAAAGGTTGTGAGATCATCCATTTGTCTATCAAACTCTCTTGCACTTAG
CCTCCTCAGTATGCCAAGCGACATGTGAAGTTCATCAATGGTTTCTTGAA
AGCACTCGATGCAATCTAAAAGAGCCAATCGATTTCTCCCTCTCATTAAG
TTTCTTCTCTTCAATTTGTACAAGAATTGAGTTACGTTCTTGACCTCACC
TATTGTCACCGAGACGCCAGCACGCGCCCACTTCCCAGGACTATTCCTAG
CACTCTTAGAAAATGGTGCTAGCGAGTGGATACAAAGATCTCGATATGTT
GTCACACTACATGCATCTCGGACGAAGTTATTCCTATTCCCGGATGCCGA
TTCGCCAGATTTTGCTAGCCAGGCAAGGAGCATGAACAACATGAACA
back to top