CX047674

Overview
NameCX047674
Unique NameCX047674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length270
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.836e-33
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   46 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.836e-33
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   46 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.836e-33
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   46 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.977e-33
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQGLKKEFSY+KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   46 LTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.523e-32
Identity = 65/70 (92.86%), Postives = 70/70 (100.00%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQGLKK++SYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVKKE+IK+HGF
Sbjct:   44 LTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.529e-31
Identity = 63/70 (90.00%), Postives = 69/70 (98.57%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQGLKKE+SY+KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:   44 LTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.114e-30
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:   44 LTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.528e-30
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ I++HGF
Sbjct:   44 LTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.354e-27
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQGLKKE SY+KILKDLKK  CCNGTVV D ELG+VIQLQGDQRKNVSTF+VQAGIVKK+ IK+H F
Sbjct:   44 LTTVQGLKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   44 LTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
The following BLAST results are available for this feature:
BLAST of CX047674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_SPOST1.836e-3397.14Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_ORYSJ1.836e-3397.14Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI1.836e-3397.14Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_MAIZE6.977e-3395.71Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI1_SALBA4.523e-3292.86Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI12_ARATH8.529e-3190.00Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI11_ARATH1.114e-3090.00Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_BRAOL5.528e-3088.57Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_PIMBR3.354e-2782.86Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1B_PIG1.155e-1958.57Eukaryotic translation initiation factor 1b OS=Sus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15G12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15G12-N24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047674 ID=CX047674; Name=CX047674; organism=Citrus sinensis; type=EST; length=270bp
CTGCACTGACGAACGCGGGTCACCAAATGTGCAGAAACGGAAGTTGCTGT
TTACTTAAAAGCCATGCATTTTGATATGTTCCTTCTTCACAATCCCAGCC
TGAACAAGGAACGTAGATACATTCTTCCGCTGGTCACCTTGGAGTTGAAT
GACCTGTCCTAGTTCAGGATCCTGGACCACTGTTCCATTGCAGCAAAATT
CCTTTTTGAGGTCCTTGAGGATTTTGTTGTAACTAAATTCTTTCTTCAAC
CCCTGGACAGTTGTCAGCCT
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