CX047668

Overview
NameCX047668
Unique NameCX047668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047668 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 5.509e-94
Identity = 169/199 (84.92%), Postives = 182/199 (91.46%), Query Frame = -3
Query:  172 LRPGFHVAAQNCWVKKGGAFTGEISAEMLVYLEIPWVILGHFERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGFTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANPSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKFAELK*NS 768
            LRP FHVAAQNCWVKKGGAFTGE+SAEMLV L IPWVILGH ERR +L E NEFVGDKVAYALSQGLKVIACVGETLE+RE+G TM+VVAAQTKAIADRV  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL AN SPE+AA+TRIIYGGSVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK AE+K N+
Sbjct:   56 LRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRNA 254          
BLAST of CX047668 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 328.946 bits (842), Expect = 1.834e-89
Identity = 163/196 (83.16%), Postives = 177/196 (90.31%), Query Frame = -3
Query:  181 LRPGFHVAAQNCWVKKGGAFTGEISAEMLVYLEIPWVILGHFERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGFTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANPSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKFAELK 768
            LR  F VAAQNCWVKKGGAFTGE+SAEMLV L+IPWVILGH ERR ILNE +EFVGDKVAYAL+QGLKVIACVGETLE+REAG TM+VVAAQTKAIADRV++WSN+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  N S ++AA TRIIYGGSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK AE+K
Sbjct:   56 LRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVK 251          
BLAST of CX047668 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 326.635 bits (836), Expect = 9.102e-89
Identity = 161/196 (82.14%), Postives = 173/196 (88.27%), Query Frame = -3
Query:  181 LRPGFHVAAQNCWVKKGGAFTGEISAEMLVYLEIPWVILGHFERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGFTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANPSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKFAELK 768
            LR  FHVAAQNCWVKKGGAFTGE+SAEMLV L +PWVILGH ERR +L E NEFVGDKVAYALSQGLKVIACVGETLEQREAG TM+VVAAQTKAIA+++  WSN+V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV  ANCKELAAQPDVDGFLVGGASLKPEFIDII  A +K
Sbjct:   56 LRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX047668 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.517e-88
Identity = 159/196 (81.12%), Postives = 174/196 (88.78%), Query Frame = -3
Query:  181 LRPGFHVAAQNCWVKKGGAFTGEISAEMLVYLEIPWVILGHFERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGFTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANPSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKFAELK 768
            LR  FHVAAQNCWVKKGGAFTGE+SAEMLV L IPWVILGH ERR +LNE NEFVGDK AYALSQGLKVIACVGETLEQREAG T+ VVAAQTKAIA++VS W+NIV+AYEPVWAIGTGKVA+PAQAQEVHFELRKW+  N   ++A + RIIYGGSVNGAN KELA QPD+DGFLVGGASLKPEF+DIIK A +K
Sbjct:   56 LRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVK 251          
BLAST of CX047668 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 320.857 bits (821), Expect = 4.995e-87
Identity = 159/196 (81.12%), Postives = 173/196 (88.27%), Query Frame = -3
Query:  181 LRPGFHVAAQNCWVKKGGAFTGEISAEMLVYLEIPWVILGHFERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGFTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANPSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKFAELK 768
            LRP   VAAQNCWVKKGGAFTGE+SAEMLV L IPWVILGH ERR +L E NEFVGDKVAYALSQGLKVIACVGETLEQRE+G TM+VVAAQTKAI++R+  W+N+V+AYEPVWAIGTGKVATP QAQEVH  LRKWL AN S E+A +TRIIYGGSV GANCKELAA+PDVDGFLVGGASLKPEFIDII  A +K
Sbjct:   56 LRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of CX047668 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 6.523e-87
Identity = 158/190 (83.16%), Postives = 171/190 (90.00%), Query Frame = -3
Query:  181 VAAQNCWVKKGGAFTGEISAEMLVYLEIPWVILGHFERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGFTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANPSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKFAELK 750
            VAAQNCWVKKGGAFTGE+SAEML  L +PWVILGH ERR +LNE NEFVGDKVAYALSQGLKVIACVGETLEQREAG TMEVVAAQTKAIAD++SSW N+VLAYEPVWAIGTGKVA+PAQAQEVH  LRKW   N S E++A+TRIIYGGSV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK AE+K
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVK 192          
BLAST of CX047668 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 317.005 bits (811), Expect = 7.212e-86
Identity = 157/196 (80.10%), Postives = 172/196 (87.76%), Query Frame = -3
Query:  181 LRPGFHVAAQNCWVKKGGAFTGEISAEMLVYLEIPWVILGHFERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGFTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANPSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKFAELK 768
            LRP   VAAQNCWVKKGGAFTGE+SAEMLV L IPWVILGH ERR +L E +EFVG+KVAYAL+QGLKVIACVGETLEQREAG TMEVVA QTKAIAD++  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAAQPDVDGFLVGGASLKPEFIDII  A +K
Sbjct:   56 LRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX047668 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 310.071 bits (793), Expect = 8.816e-84
Identity = 155/196 (79.08%), Postives = 168/196 (85.71%), Query Frame = -3
Query:  181 LRPGFHVAAQNCWVKKGGAFTGEISAEMLVYLEIPWVILGHFERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGFTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANPSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKFAELK 768
            LRP   VAAQNCWVKKGGAFTGE+SAEML  L +PWVILGH ERR +L E +EFVG+KVAYAL+QGLKVIACVGETLEQREAG TMEVVA QTKAIA ++  WSN V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAAQ DVDGFLVGGASLKPEFIDII  A +K
Sbjct:   56 LRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of CX047668 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.670e-66
Identity = 125/184 (67.93%), Postives = 145/184 (78.80%), Query Frame = -3
Query:  199 VAAQNCWVKKGGAFTGEISAEMLVYLEIPWVILGHFERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGFTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANPSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 750
            VAAQNC+    GAFTGEIS  ML  L I WVILGH ERR I  E +E + DKVA+AL++GLKVIAC+GETL++REAG T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK A+P QAQEVH  LRKW   N S +++AA RI YGGSV  ANC+ELAA+PD+DGFLVGGASLKPEFI I+
Sbjct:   60 VAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDGFLVGGASLKPEFIQIV 243          
BLAST of CX047668 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.849e-66
Identity = 126/190 (66.32%), Postives = 145/190 (76.32%), Query Frame = -3
Query:  199 LRPGFHVAAQNCWVKKGGAFTGEISAEMLVYLEIPWVILGHFERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGFTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANPSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 768
            L P   VAAQNC+    GAFTGEIS  M+      WV+LGH ERR +  E +E +G KVA+ALS+GL VIAC+GE L++REAG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII
Sbjct:   55 LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDII 244          
The following BLAST results are available for this feature:
BLAST of CX047668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY5.509e-9484.92Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ARATH1.834e-8983.16Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_MAIZE9.102e-8982.14Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_COPJA4.517e-8881.12Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ORYSJ4.995e-8781.12Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_LACSA6.523e-8783.16Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_SECCE7.212e-8680.10Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU8.816e-8479.08Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_CULTA1.670e-6667.93Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIS_RABIT2.849e-6666.32Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15G06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15G06-N12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047668 ID=CX047668; Name=CX047668; organism=Citrus sinensis; type=EST; length=770bp
TTTTTTTTTTTTTTTTTAGGAAACAAAGATAATTAAAAAAGTTTAAAAAA
AAGGTTTCAGTTGGTCGCGCTTATCAAAAACAAAAGTAATTCTGAAATTA
TACCAAACGTATTCTATATATCCACAAACAGTAAATACTTCATCAGCAAA
CTGCGCTTGAAATAAAGCTCAAGAATTTTACTTCAGCTCAGCAAATTTGA
TGATGTCAATGAACTCCGGCTTCAACGAAGCACCACCAACCAAAAATCCG
TCAACATCAGGCTGGGCAGCCAATTCCTTGCAGTTTGCACCATTTACGGA
TCCTCCGTAAATGATCCGGGTTGCTGCAGCAATTTCAGGACTGGGGTTTG
CAAAAAGCCATTTCCTCAGTTCAAAATGTACTTCTTGAGCCTGCGCTGGA
GTGGCAACCTTCCCAGTTCCAATAGCCCACACAGGTTCATAGGCCAAAAC
AATGTTTGACCAGCTTGAGACTCGATCTGCGATTGCTTTAGTTTGGGCAG
CAACAACTTCCATAGTAAATCCTGCTTCACGCTGCTCAAGTGTCTCACCA
ACACAAGCAATCACCTTCAAACCTTGAGAAAGTGCATATGCAACCTTATC
CCCAACAAACTCATTTAATTCATTCAAAATGAGTCTCCTTTCAAAATGAC
CAAGAATGACCCAAGGAATTTCCAAATAGACGAGCATTTCCGCACTAATC
TCACCGGTGAAAGCACCTCCCTTCTTGACCCAGCAATTCTGTGCCGCAAC
ATGAAAGCCAGGCCTCAACG
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