CX047666

Overview
NameCX047666
Unique NameCX047666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047666 vs. ExPASy Swiss-Prot
Match: ERD2_ENTHI (ER lumen protein retaining receptor OS=Entamoeba histolytica GN=ERD2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 45/138 (32.61%), Postives = 74/138 (53.62%), Query Frame = -3
Query:  254 YIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQLFM 667
            Y K  D   ++Y+ VP  +LAFI        +++ I W F +++E+V++LPQ+ L+++   +E   S Y+F LG+ R L   +WI         Y +     Y W P+ ++   IQT +  ++ YYYIKS  EG  F+
Sbjct:   88 YDKIHDTLNVWYLIVPCIVLAFIFTED---YSITEICWTFSIFLEAVAILPQILLLRSTGEVENLNSQYIFCLGLYRALYIINWI---------YRYATEQSY-WSPLTWICGSIQTLLYVEYFYYYIKSRVEGTKFV 212          
BLAST of CX047666 vs. ExPASy Swiss-Prot
Match: ERD21_MOUSE (ER lumen protein retaining receptor 1 OS=Mus musculus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.994e-16
Identity = 51/130 (39.23%), Postives = 73/130 (56.15%), Query Frame = -3
Query:  263 DNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQ 652
            D F + ++ VP+AILAF+V   N       ILW F +Y+ESV++LPQL ++      E  TSHY+FALGV R L   +WI        RY F    G+    +A +A ++QT +  DF Y YI  + +G+
Sbjct:   91 DTFRVEFLVVPTAILAFLV---NHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWI-------WRYHF---EGFFDL-IAIVAGLVQTVLYCDFFYLYITKVLKGK 206          
BLAST of CX047666 vs. ExPASy Swiss-Prot
Match: ERD21_HUMAN (ER lumen protein retaining receptor 1 OS=Homo sapiens GN=KDELR1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.994e-16
Identity = 51/130 (39.23%), Postives = 73/130 (56.15%), Query Frame = -3
Query:  263 DNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQ 652
            D F + ++ VP+AILAF+V   N       ILW F +Y+ESV++LPQL ++      E  TSHY+FALGV R L   +WI        RY F    G+    +A +A ++QT +  DF Y YI  + +G+
Sbjct:   91 DTFRVEFLVVPTAILAFLV---NHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWI-------WRYHF---EGFFDL-IAIVAGLVQTVLYCDFFYLYITKVLKGK 206          
BLAST of CX047666 vs. ExPASy Swiss-Prot
Match: ERD22_CAEEL (Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 47/142 (33.10%), Postives = 77/142 (54.23%), Query Frame = -3
Query:  242 YIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQLFMRMPI 667
            Y++E D F +  + VP+AILA +++       L   LW F +Y+E+V++LPQL L+Q+    E  T+HY+FALG  R L   +WI +                 + P+  +A ++QT + ADF Y Y+  + + +  M +PI
Sbjct:   86 YMRESDTFRVELLIVPAAILALLINHDFAPFEL---LWTFSIYLEAVAILPQLFLLQSTGSAEVITAHYLFALGSYRALYIFNWIYRYYTED-----------YFDPIVVVAGIVQTVLYADFFYLYVTRVVQTRKGMELPI 213          
BLAST of CX047666 vs. ExPASy Swiss-Prot
Match: ERD21_XENTR (ER lumen protein retaining receptor 1 OS=Xenopus tropicalis GN=kdelr1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 50/130 (38.46%), Postives = 73/130 (56.15%), Query Frame = -3
Query:  263 DNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQ 652
            D F + ++ VP+AILAF+V   N       ILW F +Y+ESV++LPQL ++      E  TSHY+FALG+ R L   +WI        RY F    G+    +A +A ++QT +  DF Y YI  + +G+
Sbjct:   91 DTFRVEFLIVPTAILAFLV---NHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGIYRALYLFNWI-------WRYQF---EGFFDL-IAIVAGLVQTVLYCDFFYLYITKVLKGK 206          
BLAST of CX047666 vs. ExPASy Swiss-Prot
Match: ERD21_RAT (ER lumen protein retaining receptor 1 OS=Rattus norvegicus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 50/130 (38.46%), Postives = 73/130 (56.15%), Query Frame = -3
Query:  263 DNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQ 652
            D F + ++ VP+A+LAF+V   N       ILW F +Y+ESV++LPQL ++      E  TSHY+FALGV R L   +WI        RY F    G+    +A +A ++QT +  DF Y YI  + +G+
Sbjct:   91 DTFRVEFLVVPTAVLAFLV---NHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWI-------WRYHF---EGFFDL-IAIVAGLVQTVLYCDFFYLYITKVLKGK 206          
BLAST of CX047666 vs. ExPASy Swiss-Prot
Match: ERD21_BOVIN (ER lumen protein retaining receptor 1 OS=Bos taurus GN=KDELR1 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 50/130 (38.46%), Postives = 73/130 (56.15%), Query Frame = -3
Query:  263 DNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQ 652
            D F + ++ +P+AILAF+V   N       ILW F +Y+ESV++LPQL ++      E  TSHY+FALGV R L   +WI        RY F    G+    +A +A ++QT +  DF Y YI  + +G+
Sbjct:   91 DTFRVEFLVIPTAILAFLV---NHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWI-------WRYHF---EGFFDL-IAIVAGLVQTVLYCDFFYLYITKVLKGK 206          
BLAST of CX047666 vs. ExPASy Swiss-Prot
Match: ERD2_PETHY (ER lumen protein retaining receptor OS=Petunia hybrida GN=ERD2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = -3
Query:  272 AYIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLK 670
            +Y K+ D F   ++ +P  +LA ++   N       ++W F +Y+E+V++LPQL L+Q  + I+  T  Y+F LG  R     +W+        RY F   H   W  + ++A +IQT + ADF YYY +S K
Sbjct:   87 SYDKDQDTFRHLFLVLPCLLLALVI---NEKFTFKEVMWTFSIYLEAVAILPQLVLLQRTRNIDNLTGQYIFLLGAYRSFYILNWVY-------RY-FTEPHFVHW--ITWIAGLIQTLLYADFFYYYFQSWK 206          
BLAST of CX047666 vs. ExPASy Swiss-Prot
Match: ER21A_XENLA (ER lumen protein retaining receptor 1-A OS=Xenopus laevis GN=kdelr1-A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 48/130 (36.92%), Postives = 72/130 (55.38%), Query Frame = -3
Query:  263 DNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQ 652
            D F + ++ VP+AILAF+V   N       I W F +Y+ESV++LPQL ++      E  TSHY+FALG+ R L   +WI        RY F    G+    +A +A ++QT +  DF Y Y+  + +G+
Sbjct:   91 DTFRVEFLIVPTAILAFLV---NHDFTPLEIFWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGIYRTLYLFNWI-------WRYQF---EGFFDL-IAIVAGLVQTVLYCDFFYLYVTKVLKGK 206          
BLAST of CX047666 vs. ExPASy Swiss-Prot
Match: ER21B_XENLA (ER lumen protein retaining receptor 1-B OS=Xenopus laevis GN=kdelr1-B PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 48/130 (36.92%), Postives = 72/130 (55.38%), Query Frame = -3
Query:  263 DNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQ 652
            D F + ++ VP+AIL+F+V   N       ILW F +Y+ESV++LPQL ++      E  TSHY+FALG+ R L   +WI        RY F       +  +A +A ++QT +  DF Y YI  + +G+
Sbjct:   91 DTFRVEFLIVPTAILSFLV---NHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGIYRTLYLFNWI-------WRYQF----EEFFDLIAIVAGLVQTVLYCDFFYLYITKVLKGK 206          
The following BLAST results are available for this feature:
BLAST of CX047666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERD2_ENTHI6.121e-1632.61ER lumen protein retaining receptor OS=Entamoeba h... [more]
ERD21_MOUSE7.994e-1639.23ER lumen protein retaining receptor 1 OS=Mus muscu... [more]
ERD21_HUMAN7.994e-1639.23ER lumen protein retaining receptor 1 OS=Homo sapi... [more]
ERD22_CAEEL1.044e-1533.10Putative ER lumen protein retaining receptor C28H8... [more]
ERD21_XENTR1.044e-1538.46ER lumen protein retaining receptor 1 OS=Xenopus t... [more]
ERD21_RAT1.044e-1538.46ER lumen protein retaining receptor 1 OS=Rattus no... [more]
ERD21_BOVIN1.044e-1538.46ER lumen protein retaining receptor 1 OS=Bos tauru... [more]
ERD2_PETHY3.967e-1533.08ER lumen protein retaining receptor OS=Petunia hyb... [more]
ER21A_XENLA3.967e-1536.92ER lumen protein retaining receptor 1-A OS=Xenopus... [more]
ER21B_XENLA5.181e-1536.92ER lumen protein retaining receptor 1-B OS=Xenopus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_15G04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15G04-N8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047666 ID=CX047666; Name=CX047666; organism=Citrus sinensis; type=EST; length=672bp
TTTTTTTTTTTTTTTTTGTCAAAGGTTTTGTGGATATAAATTAATCGTTC
ATTCAATCCTCATGAGACATGAAAAGATGGTCATCTGCTTTTCTAATGTA
ACCAAGACCGTTTATAAAGCCAGAAGCACAAGCACCATTAAAATTTAAAC
TGCAAAATTAGGACGAAATGAAAACAAGTGATCTAATGGTACATCACTGC
ATTTTAGTTACCTTCTCAAGAAACGGAAAATCAAAAATTTAAATGGGCAT
CCGCATGAAAAGTTGGCCTTCCTTTAAACTTTTGATGTAATAGTAACAAA
AGTCAGCCAAGATGAATGTCTGAATCATTTCCGCAAGAAAAGCCACTGGA
AACCAGAGGTATCCATGACCAAGTAAAAATAGATACCTCCCTCTTGTCTC
AATAAGCTGCAAAATCCAATGAGCAAAGGACAAGAATCGAGCAACGCCCA
AGGCAAATACATAATGGGATGTAAATGGTTCAATCATTTTAGCATTCTGC
ATCAGCCGAAGTTGAGGCAGCACTGAAACAGATTCTACGTACACACAAAA
TGCCCACAGGATCCCGCTCAAGTTTATGAGTCGATTAGAAGGGTGGACTA
TGAAAGCAAGGATAGCACTAGGCACCGCTATGTAGTATATAGGAAAGTTA
TCTAGCTCCTTGATGTAGGCCT
back to top