FC921972

Overview
NameFC921972
Unique NameFC921972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2810 contig Csv1_Contig2810:1006..1610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921972 vs. ExPASy Swiss-Prot
Match: LHT1_ARATH (Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.026e-32
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 2
Query:  404 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 604
            YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+GVCIVYMVTGGKSL K HEL
Sbjct:   82 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHEL 148          
BLAST of FC921972 vs. ExPASy Swiss-Prot
Match: LHTL2_ARATH (Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.144e-30
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 2
Query:  404 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 604
            YTLWQMV+MHEMVPGKRFDRYHELGQHAFGEKLGL+IVVPQQLIVEVGV IVYMVTGGKSL K+H+L
Sbjct:   77 YTLWQMVQMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSLKKIHDL 143          
BLAST of FC921972 vs. ExPASy Swiss-Prot
Match: LHTL1_ARATH (Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.048e-29
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 2
Query:  404 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 604
            YTLWQMVEMHEMVPGKRFDRYHELGQ AFGE+LGLYI+VPQQ+IVEVGVCIVYMVTGG+SL K HE+
Sbjct:   89 YTLWQMVEMHEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYMVTGGQSLKKFHEI 155          
BLAST of FC921972 vs. ExPASy Swiss-Prot
Match: LHT2_ARATH (Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.513e-28
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 2
Query:  404 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 604
            YTLWQMVEMHE+VPGKR DRYHELGQHAFGEKLGL+IVVPQQLIVEVGV IVYMVTGG SL KVH+L
Sbjct:   77 YTLWQMVEMHEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQL 143          
BLAST of FC921972 vs. ExPASy Swiss-Prot
Match: LHTL4_ARATH (Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.121e-26
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 2
Query:  404 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 604
            YTLWQM+EMHEM  G+RFDRYHELGQ AFG+KLGLYI+VP QL+VE+ VCIVYMVTGGKSL  VH+L
Sbjct:   80 YTLWQMIEMHEMFEGQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEISVCIVYMVTGGKSLKNVHDL 146          
BLAST of FC921972 vs. ExPASy Swiss-Prot
Match: LHTL3_ARATH (Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.045e-25
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 2
Query:  404 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 604
            YT WQM+EMHEM  GKRFDRYHELGQ AFG+KLGLYIVVP QL+VE   CIVYMVTGG+SL K+H+L
Sbjct:   82 YTFWQMIEMHEMFEGKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQL 148          
BLAST of FC921972 vs. ExPASy Swiss-Prot
Match: LTAA_AERJA (L-allo-threonine aldolase OS=Aeromonas jandaei GN=ltaA PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.981e-20
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 1
Query:   10 DSASVCLSKGLAAPVGSVIVGSKEFIKKARRLRKTFRGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGV 363
            DS S+CLSKGL APVGS++VGS  FI +ARRLRK   GGMRQ            Q++V+ + D DH++A+ LAEGL  L G+R+D+  V+TN+V+ ++T     ++A LL  ++  G+
Sbjct:  191 DSVSICLSKGLGAPVGSLLVGSHAFIARARRLRKMVGGGMRQAGILAQAGLFALQQHVVRLAD-DHRRARQLAEGLAALPGIRLDLAQVQTNMVFLQLTSG---ESAPLLAFMKARGI 304          
BLAST of FC921972 vs. ExPASy Swiss-Prot
Match: LHTL5_ARATH (Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 9.832e-20
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 2
Query:  404 YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 604
            Y+LWQMV++HE VPGKR DRY ELGQ AFG KLG +IV+PQQL+V++   IVY VTGGKSL K  EL
Sbjct:   83 YSLWQMVQLHEAVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFVEL 149          
BLAST of FC921972 vs. ExPASy Swiss-Prot
Match: LHTL6_ARATH (Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.373e-19
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 2
Query:  407 TLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 604
            T+WQMV++HE VPG RFDRY +LG++AFG KLG +IV+PQQLIV+VG  IVYMVTGGK L +  E+
Sbjct:   77 TMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMVTGGKCLKQFVEI 142          
BLAST of FC921972 vs. ExPASy Swiss-Prot
Match: LTAE_ECOLI (Low specificity L-threonine aldolase OS=Escherichia coli (strain K12) GN=ltaE PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.546e-12
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 1
Query:    1 QAADSASVCLSKGLAAPVGSVIVGSKEFIKKARRLRKTFRGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 315
            Q  DS ++CLSKGL  PVGS++VG++++IK+A R RK   GGMRQ            + NV   L  DH  A  +AE   QL+    DV   +TN+++  + E++
Sbjct:  186 QYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAIRWRKMTGGGMRQSGILAAAGIYALKNNV-ARLQEDHDNAAWMAE---QLREAGADVMRQDTNMLFVRVGEEN 286          
The following BLAST results are available for this feature:
BLAST of FC921972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LHT1_ARATH5.026e-3295.52Lysine histidine transporter 1 OS=Arabidopsis thal... [more]
LHTL2_ARATH6.144e-3091.04Lysine histidine transporter-like 2 OS=Arabidopsis... [more]
LHTL1_ARATH1.048e-2988.06Lysine histidine transporter-like 1 OS=Arabidopsis... [more]
LHT2_ARATH1.513e-2889.55Lysine histidine transporter 2 OS=Arabidopsis thal... [more]
LHTL4_ARATH4.121e-2679.10Lysine histidine transporter-like 4 OS=Arabidopsis... [more]
LHTL3_ARATH2.045e-2577.61Lysine histidine transporter-like 3 OS=Arabidopsis... [more]
LTAA_AERJA1.981e-2045.76L-allo-threonine aldolase OS=Aeromonas jandaei GN=... [more]
LHTL5_ARATH9.832e-2068.66Lysine histidine transporter-like 5 OS=Arabidopsis... [more]
LHTL6_ARATH6.373e-1966.67Lysine histidine transporter-like 6 OS=Arabidopsis... [more]
LTAE_ECOLI7.546e-1239.05Low specificity L-threonine aldolase OS=Escherichi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06056B02T7 RindPdigS Citrus sinensis cDNA clone C06056B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921972 ID=FC921972; Name=FC921972; organism=Citrus sinensis; type=EST; length=605bp
CAGGCGGCTGATTCAGCTTCGGTATGCCTGTCAAAAGGTCTTGCTGCTCC
TGTTGGATCTGTTATTGTTGGTTCCAAAGAATTTATAAAGAAGGCTCGAA
GACTTAGGAAAACCTTCCGTGGCGGTATGAGACAAGTTGGTGTCCTTTGT
GCTGCCGCATTGGTTGCTTTACAAGAGAATGTTCTTGTAATGCTTGATGG
TGACCACAAGAAAGCAAAATTGTTGGCAGAAGGATTGAATCAACTAAAAG
GATTAAGGGTGGATGTAGATGCAGTGGAGACCAACATTGTATATTTTGAA
ATTACAGAGGACTCGAAGTTGGACGCGGCATGCCTACTCAAAAAATTGGA
AGAGCATGGCGTACCTCGGCCGCGACCACGCTTCGAGCGGCCGCCCGGGC
AGGTACACCTTGTGGCAAATGGTTGAGATGCACGAGATGGTGCCGGGAAA
ACGGTTTGACAGATATCATGAACTGGGGCAGCATGCTTTTGGTGAAAAAC
TTGGTCTCTATATCGTGGTGCCACAACAGCTTATTGTTGAAGTCGGTGTG
TGCATTGTCTATATGGTTACGGGAGGCAAATCACTGCATAAGGTCCATGA
ACTTT
back to top