CX047660

Overview
NameCX047660
Unique NameCX047660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047660 vs. ExPASy Swiss-Prot
Match: Y7797_ORYSJ (B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.261e-76
Identity = 143/291 (49.14%), Postives = 202/291 (69.42%), Query Frame = 2
Query:    2 MDPEGKLVMGFRKASNAVSVQDTQPSAIPNGGHSSESFFSGVFENLSILSGYSGVLQSLKGSTDPHLSAL-SKQLNSPPGDINWVKSEKHEDKTREGLLPPSMLVPERKRSRNIGSKRKRLLIDRLDVLELKLTWEEAQDMLYPPPSVMPSIVTVEDHVFEEYEDPPVFGKRSIFIVRTSGGQEQWAQCDGCSKWRRLPVDVLLPPKWTCMDNVWDHNRCSCSAPDELTPREVENLLRLNKDFKKRKIATSHRLN-QEHEPSGLDALSNAAILGENMGDPGTASVATTTKH 868
            ++P GKLVMGFRKA+N VS+ D+Q SAI NG    ++ FS   ENL+I+SGYSG LQS+KG+ D H S++    +NS  GD++W+K++K   +  EG L         KR RNIGSK +RL +D  +  ELKL W+E Q++L P P+  P++V +ED+  EEY++PPVF KRSIF +R++G Q+QW QCD CSKWRRLP++V++  KWTC DN  D   CSCSAP+ELTP+E+  +L+  +D ++R+ +   + N  E +   LDA + AA+ G+ +G+ G+ SVATTTKH
Sbjct:  450 IEPGGKLVMGFRKATNTVSLPDSQISAIANGSILGDTLFSSTNENLAIVSGYSGFLQSIKGAADLHTSSIYDHHVNSADGDVSWLKTDKFGSRPDEGSLQ------FLKRGRNIGSKSRRLSMDAEEAWELKLYWDEVQELLRPAPTAKPTVVMIEDYEIEEYDEPPVFAKRSIFTIRSTGEQDQWIQCDDCSKWRRLPLNVIVASKWTCADNTIDSKSCSCSAPEELTPKELHIVLQQYEDMRRRRNSFGFKQNIPEMDAVSLDAFATAAVYGD-VGNQGSPSVATTTKH 733          
BLAST of CX047660 vs. ExPASy Swiss-Prot
Match: VAL2_ARATH (B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.669e-76
Identity = 145/289 (50.17%), Postives = 189/289 (65.40%), Query Frame = 2
Query:    5 DPEGKLVMGFRKASNAVSVQDTQPSAIPNGGHSSESFFSGVFENLSILSGYSGVLQSLKGSTDPHLSALSKQLNSPPGDINWVKSEKHEDKTREGLLPPSMLVPERKRSRNIGSKRKRLLIDRLDVLELKLTWEEAQDMLYPPPSVMPSIVTVEDHVFEEYEDPPVFGKRSIFIVRTSGGQEQWAQCDGCSKWRRLPVDVLLPPKWTCMDNVWDHNRCSCSAPDELTPREVENLLRLNKDFKKRKIATSH-RLNQEHEPSGLDALSNAAILGENMGDPGTASVATTTKH 868
            +PEGKLVMG+RKA+N+ + Q                                      KGS++P+L+  S  LN   GDINW K EK ED  ++ L   S L   RKR RNIG+K KRLLID +DVLELK+TWEEAQ++L PP S  PSI T+E+  FEEY++PPVFGKR++F+ R +G QEQW QCD C KWR+LPVD+LLPPKW+C DN+ D  R SCSAPDEL+PRE + L+R +K+FK+R++A+S+ +LNQ  + S L++L NA I     G+ G  +VA TTKH
Sbjct:  374 EPEGKLVMGYRKATNSTATQ------------------------------------MFKGSSEPNLNMFSNSLNPGCGDINWSKLEKSEDMAKDNLFLQSSLTSARKRVRNIGTKSKRLLIDSVDVLELKITWEEAQELLRPPQSTKPSIFTLENQDFEEYDEPPVFGKRTLFVSRQTGEQEQWVQCDACGKWRQLPVDILLPPKWSCSDNLLDPGRSSCSAPDELSPREQDTLVRQSKEFKRRRLASSNEKLNQSQDASALNSLGNAGI--TTTGEQGEITVAATTKH 624          
BLAST of CX047660 vs. ExPASy Swiss-Prot
Match: VAL1_ARATH (B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.803e-68
Identity = 140/294 (47.62%), Postives = 192/294 (65.31%), Query Frame = 2
Query:    2 MDPEGKLVMGFRKASNAVSVQDTQPSAIPNGGHSSESFFSGVFENLSILSGYSGVLQSLKGSTDPHLSALSKQLNSPPGDINWVKSEKH-----EDKTREGLLPPSMLVPERKRSRNIGSKRKRLLIDRLDVLELKLTWEEAQDMLYPPPSVMPSIVTVEDHVFEEYEDPPVFGKRSIFIVRTSGGQEQWAQCDGCSKWRRLPVDVLLPPKWTCMDNVWDHNRCSCSAPDELTPREVENLLRLNKDFKKRKIATSHRLNQEHEPSGLDALSNAAILGENMGDPGTASVATTTKH 868
            +DP GKL+MG RKA+NA    D Q   + NG  + ++  SGV EN   ++G S +            S + K+LN  P ++N   SE +     +D TR         V E+KR+R IG+K KRLL+   + +EL+LTWEEAQD+L P PSV P+IV +E+   EEY++PPVFGKR+I   + SG QE+WA CD CSKWRRLPVD LL  KWTC+DNVWD +RCSCSAP+E + +E+EN+L++ ++ KKR+   S     + EP GLDAL++AA+LG+ +G+P    VATTT+H
Sbjct:  382 VDPGGKLIMGSRKAANA---GDMQGCGLTNGTSTEDTSSSGVTENPPSINGSSCI------------SLIPKELNGMPENLN---SETNGGRIGDDPTR---------VKEKKRTRTIGAKNKRLLLHSEESMELRLTWEEAQDLLRPSPSVKPTIVVIEEQEIEEYDEPPVFGKRTIVTTKPSGEQERWATCDDCSKWRRLPVDALLSFKWTCIDNVWDVSRCSCSAPEE-SLKELENVLKVGREHKKRRTGESQAAKSQQEPCGLDALASAAVLGDTIGEP---EVATTTRH 644          
BLAST of CX047660 vs. ExPASy Swiss-Prot
Match: Y7633_ORYSJ (B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 4.227e-48
Identity = 117/292 (40.07%), Postives = 164/292 (56.16%), Query Frame = 2
Query:    2 MDPEGKLVMGFRKASNAVSVQDTQPSAIPNGGHSSESFFSGVFENLSILSGYSGVLQSLKGSTDPHLSALSKQLNSPPGDINWVKSEKHEDKTREGL-LPPSMLVPERKRSRNIGSKRKRLLIDRLDVLELKLTWEEAQDMLYPPPSVMPSIVTVEDHVFEEYEDPPVFGKRSIFIVRTSGGQEQWAQCDGCSKWRRLPVDVLLPPKWTCMDNVWDHNRCSCSAPDELTPREVENLLRLNKDFKKRKIATSHRLNQEH--EPSGLDALSNAAILGENMGDPGTASVATTTKH 868
            +DPEGKLVMGFRKA+N  + QD QP+   NG        + V    S  S  + V + +K +T+   S       SP       K +K     +EG     S  +P ++++ ++G K KR  +D  + +ELK+TWEEAQ++L PPP   PSIV V+ H FEEYE+PP+ G+R+ F+   SG   QWAQC+ CSKWR+LPVD LLP KWTC DN WD  R SC +  E+   E+  ++ +     K+   T  +++ ++     GLD L+N AILGE    P       TT+H
Sbjct:  540 IDPEGKLVMGFRKATNLSAEQD-QPTKPANGVLPPPEANNKVVVPDS--SPNAAVPRPIKVNTESKSS-------SPVEQATACKIDKGALPQKEGPGTSSSSPLPVKRKATSVGPKIKRFHMDSEESMELKITWEEAQELLRPPPKA-PSIVVVDGHEFEEYEEPPILGRRTYFVTDQSGENHQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDSERSSCDSAQEINMEELGEMIPIKPGAAKK---TKGKVDTDNIDVSDGLDTLANLAILGEGESLPS----QPTTRH 813          
The following BLAST results are available for this feature:
BLAST of CX047660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y7797_ORYSJ1.261e-7649.14B3 domain-containing protein Os07g0679700 OS=Oryza... [more]
VAL2_ARATH3.669e-7650.17B3 domain-containing transcription repressor VAL2 ... [more]
VAL1_ARATH4.803e-6847.62B3 domain-containing transcription repressor VAL1 ... [more]
Y7633_ORYSJ4.227e-4840.07B3 domain-containing protein Os07g0563300 OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_15F12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15F12-L24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047660 ID=CX047660; Name=CX047660; organism=Citrus sinensis; type=EST; length=869bp
GATGGATCCGGAAGGAAAGCTTGTTATGGGGTTTCGTAAAGCATCTAATG
CTGTTTCAGTGCAGGATACGCAACCATCTGCCATTCCTAATGGCGGTCAT
TCAAGTGAAAGTTTCTTTTCGGGTGTTTTTGAGAACCTATCTATTTTGAG
TGGTTACTCTGGCGTTCTTCAGTCACTAAAGGGAAGCACTGATCCCCACC
TAAGCGCACTGTCCAAACAATTGAATTCGCCTCCTGGTGACATCAACTGG
GTTAAATCTGAGAAGCATGAAGACAAAACAAGGGAAGGCTTGCTGCCACC
ATCGATGCTAGTTCCAGAAAGAAAAAGATCTCGAAATATTGGTTCAAAAC
GCAAGAGGTTGCTCATTGACAGACTAGATGTTCTAGAGCTTAAACTTACT
TGGGAAGAGGCACAGGATATGCTCTACCCACCCCCAAGTGTTATGCCAAG
CATTGTGACGGTCGAGGATCATGTTTTTGAAGAATATGAAGATCCTCCAG
TTTTTGGGAAGAGGAGCATTTTCATAGTCCGTACATCCGGGGGACAGGAG
CAATGGGCTCAATGTGATGGTTGCTCGAAATGGCGAAGGTTGCCTGTTGA
TGTACTTCTTCCTCCTAAATGGACGTGTATGGACAATGTCTGGGATCACA
ACAGGTGCTCGTGTTCAGCACCGGATGAACTAACTCCCCGAGAAGTGGAA
AATCTCCTCAGGCTAAACAAAGATTTCAAAAAGCGGAAAATAGCAACAAG
TCATAGGCTGAATCAGGAGCATGAACCTTCTGGTCTGGATGCATTGTCCA
ATGCTGCAATTCTAGGAGAGAACATGGGTGACCCTGGCACTGCATCAGTT
GCAACTACAACCAAACACC
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