CX047659

Overview
NameCX047659
Unique NameCX047659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047659 vs. ExPASy Swiss-Prot
Match: Y7797_ORYSJ (B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.075e-40
Identity = 96/211 (45.50%), Postives = 123/211 (58.29%), Query Frame = -1
Query:  231 DALSNAAILGENMGDPGTASVATTTKHPRHRPGCSCIVCIQPPSGKG-KHKPTCTCLVCMTVKRRFKTLMMXXXXXXXXXXXEVAQRNQPTWGPKEEAEVDSSSKHVSSHLDPSENEARSANELESKSQNNNLSGKLAESSKAELDLNCHPDR---EEVQAGLNRVSMMKLLQVASHPLETYLKQNGLTSLTSDQQASS---GTHAPPQAA 842
            DA + AA+ G+ +G+ G+ SVATTTKHPRHRPGC+CIVCIQPPSGKG KH P CTC VCMTV+RRFKTLMM               R +     +EEAE       ++       + +RS   +++    +       + +K  +DLN HP     EE   G  RVSM+ LL+VA+ PLE Y+KQNGLTSL  +Q +SS   G    PQ A
Sbjct:  708 DAFATAAVYGD-VGNQGSPSVATTTKHPRHRPGCTCIVCIQPPSGKGPKHNPACTCNVCMTVRRRFKTLMM---------------RKKQRQSEREEAEASKKIAWMNRDEPEGSSLSRSPQTVDTTRDGDVTMFDKVDINKGHIDLNFHPTAVRDEERHGGQPRVSMVSLLEVANRPLENYMKQNGLTSLAGEQGSSSTCTGAATVPQPA 902          
BLAST of CX047659 vs. ExPASy Swiss-Prot
Match: VAL2_ARATH (B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.083e-32
Identity = 88/211 (41.71%), Postives = 113/211 (53.55%), Query Frame = -1
Query:  219 DALSNAAILGENMGDPGTASVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCLVCMTVKRRFKTLMMXXXXXXXXXXXEVAQRNQPTWGPKEEAEVDSSSKHVSSHLDPSENEARSANELESKSQNNNLSGKLAESSKAELDLNCHPDREEVQAGLNRVSMMKLLQVASHPLETYLKQNGLTSLTSDQQAS---SGTHAPPQAAGESE 842
            ++L NA I     G+ G  +VA TTKHPRHR GCSCIVC QPPSGKGKHKP+CTC VC  VKRRF+TLM+              +RN+   G              +S    S++E R   E+ES       +G+        +DLN  P       G +RVSMM+LLQ A+ PLE YLKQ  +++   +QQ+S   S  H    AA E+E
Sbjct:  600 NSLGNAGIT--TTGEQGEITVAATTKHPRHRAGCSCIVCSQPPSGKGKHKPSCTCTVCEAVKRRFRTLML-------------RKRNKGEAGQ-------------ASQQAQSQSECRDETEVESIPAVELAAGE-------NIDLNSDP-------GASRVSMMRLLQAAAFPLEAYLKQKAISNTAGEQQSSDMVSTEHGSSSAAQETE 768          
BLAST of CX047659 vs. ExPASy Swiss-Prot
Match: VAL1_ARATH (B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.935e-26
Identity = 66/142 (46.48%), Postives = 85/142 (59.86%), Query Frame = -1
Query:  438 DALSNAAILGENMGDPGTASVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCLVCMTVKRRFKTLMMXXXXXXXXXXXEVAQRNQ-------PTWGPKEEAEVDSSSKHVSSHLDPSENEARSANELESKSQNNNLSGK 842
            DAL++AA+LG+ +G+P    VATTT+HPRHR GCSCIVCIQPPSGKG+HKPTC C VC TVKRRFKTLMM             A+  +        +   KEE EV+++   ++S  DP   E   A  +E +       G+
Sbjct:  621 DALASAAVLGDTIGEP---EVATTTRHPRHRAGCSCIVCIQPPSGKGRHKPTCGCTVCSTVKRRFKTLMMRRKKKQLERDVTAAEDKKKKDMELAESDKSKEEKEVNTARIDLNS--DPYNKEDVEAVAVEKEESRKRAIGQ 757          
BLAST of CX047659 vs. ExPASy Swiss-Prot
Match: Y7633_ORYSJ (B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.528e-26
Identity = 68/158 (43.04%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  372 DALSNAAILGENMGDPGTASVATTTKHPRHRPGCSCIVCIQPPSGKG-KHKPTCTCLVCMTVKRRFKTLMMXXXXXXXXXXXEVAQRNQPTWGPKEEAEVDSSSKHVSSHLDPSENEARSANELESKSQNNNLSGKLAESSKAELDLNCHPDREEVQA 842
            D L+N AILGE    P       TT+HPRHRPGCSCIVCIQPPSGKG KHK TCTC VCMTV+RRF+TLMM               R +      E      S  H +S   P +    +    E  S +N    + +   K ++DLN  P+RE+ Q+
Sbjct:  791 DTLANLAILGEGESLPSQP----TTRHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCMTVRRRFRTLMMRREKRQQSEKDSGVPRKREPGQSSEPVPQSGSGAHPTSTSSPHQRADTNGEGPEDMSIDNK---RTSSPVKNQIDLNSQPEREDEQS 941          
BLAST of CX047659 vs. ExPASy Swiss-Prot
Match: VAL3_ARATH (B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.472e-15
Identity = 66/201 (32.84%), Postives = 98/201 (48.76%), Query Frame = -1
Query:  189 TTTKHPRHRPGCSCIVCIQPPSGKG-KHKPTCTCLVCMTVKRRFKTLMMXXXXXXXXXXXEVAQRNQPTWGPKEEAEVDSSSKHVSSHLDPSENEARSANELESKSQNNNLSGKLAESSKAELDLNCHPDR-EEVQAGLNRVSMMKLLQVASHPLETYLKQNGLTSLTSDQQASSGTHAPPQAAGESEGQL---NELASAT 776
            TTTKHPRHR GC+CI+CIQ PSG G KH   C+C VC T KRR ++L++                       K++ E + +++ +   L+      +SAN  E+  ++       A   K +LDLN  P++ EE   G N+ +  + L     P +  +K    +S TS   +SS  H+  Q   E EG+L    E+A  T
Sbjct:  556 TTTKHPRHRDGCTCIICIQSPSGIGPKHDRCCSCAVCDTNKRRRRSLLLRR--------------------EKKQMEKEDNARKLLEQLNSDNGLHQSANNSENHERH-------ASPLKVQLDLNFKPEKDEESLPGSNKTTKSETL-----PHDDTVK----SSFTS--PSSSSAHS--QNNKEDEGKLKTTTEIADTT 716          
The following BLAST results are available for this feature:
BLAST of CX047659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y7797_ORYSJ3.075e-4045.50B3 domain-containing protein Os07g0679700 OS=Oryza... [more]
VAL2_ARATH3.083e-3241.71B3 domain-containing transcription repressor VAL2 ... [more]
VAL1_ARATH1.935e-2646.48B3 domain-containing transcription repressor VAL1 ... [more]
Y7633_ORYSJ2.528e-2643.04B3 domain-containing protein Os07g0563300 OS=Oryza... [more]
VAL3_ARATH4.472e-1532.84B3 domain-containing transcription factor VAL3 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_15F12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15F12-L24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047659 ID=CX047659; Name=CX047659; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTTTTACAGAAATATATATATTTGCGACTCAGAGAAAAGAAAAGA
ACACCTATCATGTTAAGTTATATAAAAAGAAGCACTAAAAATAGAATAAA
TGAATGAAGAGAAACTTCATTCAGGATCATCTGGGATTTGATCTGAAACC
GGTTCACAATTGTCTTCACCTCCGCTTTCTCGCTCTTGAGTCGCAGAAGC
AAGCTCGTTAAGCTGTCCTTCACTCTCTCCTGCAGCTTGTGGTGGAGCAT
GTGTTCCTGAACTTGCTTGTTGGTCAGATGTCAAGCTTGTTAGACCATTC
TGCTTCAGATAAGTCTCCAAAGGATGACTGGCTACTTGGAGAAGTTTCAT
CATGCTCACTCGATTCAACCCGGCTTGCACCTCTTCACGATCGGGATGGC
AATTCAAGTCTAACTCTGCCTTGCTGGATTCAGCCAATTTTCCGGACAGA
TTGTTGTTTTGGCTCTTTGATTCTAACTCATTCGCAGACCTGGCTTCATT
CTCTGAAGGATCAAGGTGTGATGATACATGCTTGGAACTGCTGTCTACTT
CTGCTTCCTCCTTGGGACCCCAAGTTGGTTGATTTCTTTGCGCAACCTCT
TCTTCACGCTCAGATTGGCGCTTCTTCTTGCGCATCATGAGGGTTTTGAA
ACGTCTTTTAACCGTCATACACACAAGGCATGTGCATGTGGGCTTGTGCT
TGCCCTTCCCACTCGGGGGTTGAATGCACACAATACATGAACAGCCAGGA
CGATGCCTTGGGTGTTTGGTTGTAGTTGCAACTGATGCAGTGCCAGGGTC
ACCCATGTTCTCTCCTAGAATTGCAGCATTGGACAATGCATC
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