CX047645

Overview
NameCX047645
Unique NameCX047645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_WHEAT (Cytochrome b6 OS=Triticum aestivum GN=petB PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -1 
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:  174 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_TOBAC (Cytochrome b6 OS=Nicotiana tabacum GN=petB PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -1 
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:  174 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_SPIOL (Cytochrome b6 OS=Spinacia oleracea GN=petB PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -1 
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:  174 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_PSINU (Cytochrome b6 OS=Psilotum nudum GN=petB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -1 
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:  174 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_PHYPA (Cytochrome b6 OS=Physcomitrella patens GN=petB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -1 
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:  174 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_ORYSJ (Cytochrome b6 OS=Oryza sativa subsp. japonica GN=petB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -1 
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:  174 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_ORYSI (Cytochrome b6 OS=Oryza sativa subsp. indica GN=petB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -1 
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:  174 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_ORYSA (Cytochrome b6 OS=Oryza sativa GN=petB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -1 
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:  174 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_ORYNI (Cytochrome b6 OS=Oryza nivara GN=petB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -1 
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:  174 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_OENEH (Cytochrome b6 OS=Oenothera elata subsp. hookeri GN=petB PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -1 
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:  174 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
The following BLAST results are available for this feature:
BLAST of CX047645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
CYB6_WHEAT3.053e-16100.00Cytochrome b6 OS=Triticum aestivum GN=petB PE=2 SV... [more]
CYB6_TOBAC3.053e-16100.00Cytochrome b6 OS=Nicotiana tabacum GN=petB PE=2 SV... [more]
CYB6_SPIOL3.053e-16100.00Cytochrome b6 OS=Spinacia oleracea GN=petB PE=1 SV... [more]
CYB6_PSINU3.053e-16100.00Cytochrome b6 OS=Psilotum nudum GN=petB PE=3 SV=1[more]
CYB6_PHYPA3.053e-16100.00Cytochrome b6 OS=Physcomitrella patens GN=petB PE=... [more]
CYB6_ORYSJ3.053e-16100.00Cytochrome b6 OS=Oryza sativa subsp. japonica GN=p... [more]
CYB6_ORYSI3.053e-16100.00Cytochrome b6 OS=Oryza sativa subsp. indica GN=pet... [more]
CYB6_ORYSA3.053e-16100.00Cytochrome b6 OS=Oryza sativa GN=petB PE=3 SV=1[more]
CYB6_ORYNI3.053e-16100.00Cytochrome b6 OS=Oryza nivara GN=petB PE=3 SV=1[more]
CYB6_OENEH3.053e-16100.00Cytochrome b6 OS=Oenothera elata subsp. hookeri GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15F03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15F03-L6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047645 ID=CX047645; Name=CX047645; organism=Citrus sinensis; type=EST; length=828bp
TCATGATCAAGAGCTTTCTGGGTCGTCTCAGCCCTTGTGATTCACCCTTA
TCCAAAAACAAAAAAAAAAAAAAGATCGAGCTGAGATTTTTCTTTTTCGC
GTACAAAGGATTTACTTGTTACTAATATAGTCTAGCCGCTGCTCTTCTTT
AGACCCCTTGTTTCACTCCGATAGTATCATAAATCGGGATCGGTGCAGAA
GAAATGAATGCATTTCCATACTATTAAGTAAGTAATCTAGAATCTAGCGA
AAACATAATCTAGATTATGCCACATCGCTTATTCTACTGGATCTTACGGA
GCCTGCTCATGCGCGGCATGCTTGGGGCTGATCATAGAAAAGATTCTTTT
CAATCGAACCAACCTATCCTCTCTATGGGGTGCCGGTTGGAACAAAGACA
CATTTGGTCGCGAATTCCAATGTAGCAGATTAAAGACATATTTCTGCACG
GCCCAATCAATAGTTCAAGTCACACACTCCCATAATCCATTTTCTCTTCG
GAGAATTCCCGTCAACTATTCATTTCATTCATGTCAAATAAAAAGTCCAA
TATTATGGAGTTGAGGGGAAATTTCCAACTCCATGTCTTATTCTTTGTCA
ATAATCCATATTTGTAGCAATGAAATATTATTGTTCCTCCCCCAAGCAAT
AAGATAAAGGGTTGATTACAAATCGCTATAATCTAGATTTTGTATAATTT
TATAAAGGGCCAGAAATACCTTGTTTACGTATCATTAGGAAATGCATTAA
CATAAATACGGCAGTAAGAAGAGGTAATACAAAAGTGTGTAAACTATAAA
AACGAGTCAAAGTGGACTGTCCCACACT
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