CX047641

Overview
NameCX047641
Unique NameCX047641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047641 vs. ExPASy Swiss-Prot
Match: NU5M_WHEAT (NADH-ubiquinone oxidoreductase chain 5 OS=Triticum aestivum GN=ND5 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 3 
Query:    3 TCVSFSSILSLIAFYEVAPGASACYLRIAPWISSEMFDASWGFFGD 140
            TCVSFSSILSLIAFYEVA GASACYLRIAPWISSEMFDASWGF  D
Sbjct:   34 TCVSFSSILSLIAFYEVALGASACYLRIAPWISSEMFDASWGFLFD 79
[Close]
BLAST of CX047641 vs. ExPASy Swiss-Prot
Match: NU5M_ARATH (NADH-ubiquinone oxidoreductase chain 5 OS=Arabidopsis thaliana GN=ND5 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 3 
Query:    3 TCVSFSSILSLIAFYEVAPGASACYLRIAPWISSEMFDASWGFFGD 140
            TCVSFSSILSLIAFYEVA GASACYLRIAPWISSEMFDASWGF  D
Sbjct:   34 TCVSFSSILSLIAFYEVALGASACYLRIAPWISSEMFDASWGFLFD 79
[Close]
BLAST of CX047641 vs. ExPASy Swiss-Prot
Match: NU5M_OENBE (NADH-ubiquinone oxidoreductase chain 5 OS=Oenothera bertiana GN=ND5 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 3 
Query:    3 TCVSFSSILSLIAFYEVAPGASACYLRIAPWISSEMFDASWGFFGD 140
            TCVSFSSILSLIAFYEVA GASACYL+IAPWISSEMFDASWGF  D
Sbjct:   34 TCVSFSSILSLIAFYEVALGASACYLKIAPWISSEMFDASWGFVFD 79
[Close]
BLAST of CX047641 vs. ExPASy Swiss-Prot
Match: NU5M_MARPO (NADH-ubiquinone oxidoreductase chain 5 OS=Marchantia polymorpha GN=ND5 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 3 
Query:    3 TCVSFSSILSLIAFYEVAPGASACYLRIAPWISSEMFDASWGFFGD 140
            TCVS SSI S IAFYEVA  ASACY++IAPWI SE+FDA+WGF  D
Sbjct:   34 TCVSLSSIFSCIAFYEVALCASACYIKIAPWIFSELFDAAWGFLFD 79
The following BLAST results are available for this feature:
BLAST of CX047641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NU5M_WHEAT2.058e-1793.48NADH-ubiquinone oxidoreductase chain 5 OS=Triticum... [more]
NU5M_ARATH2.058e-1793.48NADH-ubiquinone oxidoreductase chain 5 OS=Arabidop... [more]
NU5M_OENBE5.989e-1791.30NADH-ubiquinone oxidoreductase chain 5 OS=Oenother... [more]
NU5M_MARPO1.169e-1273.91NADH-ubiquinone oxidoreductase chain 5 OS=Marchant... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_15E12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15E12-J24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047641 ID=CX047641; Name=CX047641; organism=Citrus sinensis; type=EST; length=700bp
CTACGTGCGTTTCATTCTCTTCAATCTTATCTTTGATTGCTTTTTATGAA
GTCGCACCGGGAGCTAGTGCTTGCTATCTAAGAATTGCTCCATGGATCTC
ATCGGAAATGTTTGATGCTTCTTGGGGCTTCTTTGGCGACCGTGAAGTCA
CCGGATGAATTGCCGAGTAGATAGATCAGATCCGGACGCGGCTGTTGCTC
CGCGGCGATACGGACTCGACCCGCTCCTACCCACCCCGGGGCACCATAGC
ATGTCGGGAATAAGGGGGGACATACTGGACGTAACCACTCCCTTGGTTGG
GGGGCTGTGCCGCCCTGCCTTTCGATCGATACACAGTTGAGTAGGCCGAT
CACGAACGCTACAGGTGTGGGAGCGATCCTGGTCAGGGAAGGCTAAGACG
GCGCCTCGCATATGAGTAGCAAGAGGGCGCTTATGCCCCGACGGTGGGGC
CTTATGGGGGAGGGCCCAGCCCAATAGGGACAGCACACCCCCCGCTTCAA
GCGCACCTCTGTATCGACTGAATCACTCTAAGGGTCTAGTCGGTGGAACC
GGTGAACCACGCGAGCTGGTTAGATGCGTGGGGCAGAGGGCTCGTAGTAC
CCCCTTCTCTTGATCCAGCCTTTTCTTCGCTTCGGTAGTGAATTAAAAAA
AGAGGCAGGCCTGCACGCCCTATTTGAGATGAGACTACTAAGGCAGGTGA
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