CX047625

Overview
NameCX047625
Unique NameCX047625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047625 vs. ExPASy Swiss-Prot
Match: TGA2_ARATH (Transcription factor TGA2 OS=Arabidopsis thaliana GN=TGA2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.654e-14
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 3 
Query:    3 TLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 125
            TLQQM R+LTTRQSARALLAIHDYFSRLRALSSLW+ARPRE
Sbjct:  290 TLQQMIRVLTTRQSARALLAIHDYFSRLRALSSLWLARPRE 330
[Close]
BLAST of CX047625 vs. ExPASy Swiss-Prot
Match: TGA21_TOBAC (TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.654e-14
Identity = 37/41 (90.24%), Postives = 41/41 (100.00%), Query Frame = 3 
Query:    3 TLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 125
            TLQQMHR+LTTRQSARALLAI++YFSRLRALSSLW+ARPRE
Sbjct:  413 TLQQMHRVLTTRQSARALLAINEYFSRLRALSSLWLARPRE 453
[Close]
BLAST of CX047625 vs. ExPASy Swiss-Prot
Match: HBP1C_WHEAT (Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.388e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:    3 TLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 125
            TLQQM RILTTRQSARALLAI DYFSRLRALSSLW+ARPRE
Sbjct:  436 TLQQMQRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 476
[Close]
BLAST of CX047625 vs. ExPASy Swiss-Prot
Match: TGA6_ARATH (Transcription factor TGA6 OS=Arabidopsis thaliana GN=TGA6 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.093e-13
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:    3 TLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 125
            TLQQM R+LTTRQSARALLAIHDY SRLRALSSLW+ARPRE
Sbjct:  290 TLQQMLRVLTTRQSARALLAIHDYSSRLRALSSLWLARPRE 330
[Close]
BLAST of CX047625 vs. ExPASy Swiss-Prot
Match: HBP1B_WHEAT (Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 3 
Query:    3 TLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 125
            TLQQM RILTTRQSARALL I DY SRLRALSSLW+ARP+E
Sbjct:  292 TLQQMQRILTTRQSARALLVISDYSSRLRALSSLWLARPKE 332
[Close]
BLAST of CX047625 vs. ExPASy Swiss-Prot
Match: TGA5_ARATH (Transcription factor TGA5 OS=Arabidopsis thaliana GN=TGA5 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.781e-11
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 3 
Query:    3 TLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 125
            T QQM R+LTTRQSARALLA+H+Y  RLRALSSLW+ARPRE
Sbjct:  290 TYQQMVRLLTTRQSARALLAVHNYTLRLRALSSLWLARPRE 330
The following BLAST results are available for this feature:
BLAST of CX047625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TGA2_ARATH3.654e-1492.68Transcription factor TGA2 OS=Arabidopsis thaliana ... [more]
TGA21_TOBAC3.654e-1490.24TGACG-sequence-specific DNA-binding protein TGA-2.... [more]
HBP1C_WHEAT1.388e-1392.68Transcription factor HBP-1b(c1) (Fragment) OS=Trit... [more]
TGA6_ARATH3.093e-1390.24Transcription factor TGA6 OS=Arabidopsis thaliana ... [more]
HBP1B_WHEAT7.618e-1285.37Transcription factor HBP-1b(c38) OS=Triticum aesti... [more]
TGA5_ARATH3.781e-1180.49Transcription factor TGA5 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_15E01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15E01-J2-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047625 ID=CX047625; Name=CX047625; organism=Citrus sinensis; type=EST; length=538bp
AAACATTACAACAAATGCACCGAATATTGACAACGCGCCAGTCTGCTCGT
GCACTCCTTGCAATCCATGATTATTTCTCCCGACTACGTGCTCTTAGTTC
CCTCTGGATGGCCCGCCCAAGAGAGTGAAGATGCATTGTGTTTTTTGCCA
GGTAGATTTGTGAAATTATGCACCTTGAGAGGGGGGGGGGGAAGGAATCT
GAATTACATCCTGAAAAAGATAATTGTTCTGTAGTTGTGACAATTTTTCC
CCCCTTTATCTGTTTAGATTTTCTTATGTCCTAGATTTTTATACTTTAGT
GTTGGTACTGGTTTTTCTGTTAATAGGTCGTACTGGTAGAATTTGTCCAT
TATTCTCTGAAATGGATATGTATTTCTGTTTATTATTCGCCGCATAATCG
TTATCTTCTCTGGGACTCTTGTAAGTTGTAAGTGTTATTCCAGTGTCTGT
TGTCATTGTAACCAATGTTTCTCAAATGAATTTGAATGTTTGATGAGATA
AAGTTATTAAGTTTTTTTTTCTAAAAAAAAAAAAAAAA
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