CX047624

Overview
NameCX047624
Unique NameCX047624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.324e-46
Identity = 93/102 (91.18%), Postives = 93/102 (91.18%), Query Frame = -3
Query:  185 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 490
            LGISDWNSIFWIAHPGGPAILDQVES         KATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA
Sbjct:  290 LGISDWNSIFWIAHPGGPAILDQVESKLGLKGEKLKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 391          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.207e-43
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = -3
Query:  194 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 490
            +GISDWNS+FWIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KATTGEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  295 IGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 393          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.160e-42
Identity = 84/102 (82.35%), Postives = 88/102 (86.27%), Query Frame = -3
Query:  185 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 490
            +GISDWNSIFWIAHPGGPAILDQVE+         +ATRQVLSEYGNMSSACVLFILDEMRKK  EE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPI A
Sbjct:  292 IGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKKCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPINA 393          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.160e-42
Identity = 82/99 (82.83%), Postives = 88/99 (88.89%), Query Frame = -3
Query:  194 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 490
            +GISDWNS+FWIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KATTG+GLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  294 IGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGDGLDWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.160e-42
Identity = 84/102 (82.35%), Postives = 88/102 (86.27%), Query Frame = -3
Query:  185 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 490
            +GISDWNSIFWIAHPGGPAILDQVE+         +ATRQVLSEYGNMSSACVLFILDEMRK   EE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  292 IGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKNCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHS2_MAIZE (Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.979e-42
Identity = 82/100 (82.00%), Postives = 88/100 (88.00%), Query Frame = -3
Query:  191 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 490
            LGISDWNSIFW+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  294 LGISDWNSIFWVAHPGGPAILDQVEAKVGLDKARMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.584e-42
Identity = 82/102 (80.39%), Postives = 88/102 (86.27%), Query Frame = -3
Query:  185 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 490
            LGISDWNSIFW+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  293 LGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.584e-42
Identity = 82/102 (80.39%), Postives = 88/102 (86.27%), Query Frame = -3
Query:  185 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 490
            LGISDWNSIFW+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  293 LGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 9.820e-42
Identity = 83/102 (81.37%), Postives = 86/102 (84.31%), Query Frame = -3
Query:  185 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 490
            +GISDWNSIFWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKK  EE  ATTGEGL+WGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  292 IGISDWNSIFWIAHPGGPAILDQVEEKLELKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKCAEEGMATTGEGLEWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHS1_MAIZE (Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.675e-41
Identity = 80/100 (80.00%), Postives = 87/100 (87.00%), Query Frame = -3
Query:  191 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 490
            LGISDWNSIFW+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+  E+ ++TTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  293 LGISDWNSIFWVAHPGGPAILDQVEAKVGLDKARMRATRHVLSEYGNMSSACVLFILDEMRKRPAEDGQSTTGEGLDWGVLFGFGPGLTVETVVLHSVPI 392          
The following BLAST results are available for this feature:
BLAST of CX047624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHS2_CITSI1.324e-4691.18Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHSY_PETCR5.207e-4383.84Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHS2_RUTGR1.160e-4282.35Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHS2_DAUCA1.160e-4282.83Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHS1_RUTGR1.160e-4282.35Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHS2_MAIZE1.979e-4282.00Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1[more]
CHSY_ORYSJ2.584e-4280.39Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI2.584e-4280.39Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHS3_RUTGR9.820e-4281.37Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHS1_MAIZE1.675e-4180.00Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15D11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15D11-H22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047624 ID=CX047624; Name=CX047624; organism=Citrus sinensis; type=EST; length=495bp
CAAGAATTTATGCATAAACACAAAGCGTTGCCCAGGTTTGGTGACGTCAT
AAGAGAAAAGGCACGATGCCTTAAACTCAATTGACAAAACTAAACCTTCA
CACGATCAACCAATAACTCAACTGTGAAAGCATACAACATAAAGTTACTG
AACTACTAAACATACTGATGGAGTTCTCACTTCAAGCTTTGATGGGGACA
CTGTGCAGCACAACGGTCTCGACGGTGAGCCCCGGCCCGAACCCGAACAG
CACACCCCAATCAAGCCCTTCGCCGGTGGTGGCTTTCGCTTCCTCAACAG
ACTTCTTTCTCATCTCGTCAAGGATGAACAAGACACAAGCGCTTGACATG
TTACCGTACTCACTCAACACTTGACGTGTGGCCTTCAGCTTCTCCCCTTT
GAGGCCCAGTTTAGACTCCACTTGGTCCAGAATTGCGGGCCCACCGGGGT
GAGCGATCCAGAATATCGAGTTCCAGTCGCTGATGCCAAGCGCCT
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