CX047623

Overview
NameCX047623
Unique NameCX047623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.301e-46
Identity = 92/102 (90.20%), Postives = 92/102 (90.20%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 308
            LGISDWNSIFWIAHPGGPAILDQVES          ATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA
Sbjct:  290 LGISDWNSIFWIAHPGGPAILDQVESKLGLKGEKLKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 391          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.114e-43
Identity = 83/99 (83.84%), Postives = 87/99 (87.88%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 299
            +GISDWNS+FWIAHPGGPAILDQVE           ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KATTGEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  295 IGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 393          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.139e-42
Identity = 84/102 (82.35%), Postives = 87/102 (85.29%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 308
            +GISDWNSIFWIAHPGGPAILDQVE+          ATRQVLSEYGNMSSACVLFILDEMRKK  EE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPI A
Sbjct:  292 IGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKKCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPINA 393          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.139e-42
Identity = 82/99 (82.83%), Postives = 87/99 (87.88%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 299
            +GISDWNS+FWIAHPGGPAILDQVE           ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KATTG+GLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  294 IGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGDGLDWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.139e-42
Identity = 84/102 (82.35%), Postives = 87/102 (85.29%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 308
            +GISDWNSIFWIAHPGGPAILDQVE+          ATRQVLSEYGNMSSACVLFILDEMRK   EE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  292 IGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKNCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS2_MAIZE (Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.943e-42
Identity = 82/100 (82.00%), Postives = 87/100 (87.00%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 302
            LGISDWNSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  294 LGISDWNSIFWVAHPGGPAILDQVEAKVGLDKARMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.538e-42
Identity = 82/102 (80.39%), Postives = 87/102 (85.29%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 308
            LGISDWNSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  293 LGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.538e-42
Identity = 82/102 (80.39%), Postives = 87/102 (85.29%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 308
            LGISDWNSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  293 LGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 9.645e-42
Identity = 83/102 (81.37%), Postives = 85/102 (83.33%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 308
            +GISDWNSIFWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRKK  EE  ATTGEGL+WGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  292 IGISDWNSIFWIAHPGGPAILDQVEEKLELKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKCAEEGMATTGEGLEWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS1_MAIZE (Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.645e-41
Identity = 80/100 (80.00%), Postives = 86/100 (86.00%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 302
            LGISDWNSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+  E+ ++TTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  293 LGISDWNSIFWVAHPGGPAILDQVEAKVGLDKARMRATRHVLSEYGNMSSACVLFILDEMRKRPAEDGQSTTGEGLDWGVLFGFGPGLTVETVVLHSVPI 392          
The following BLAST results are available for this feature:
BLAST of CX047623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHS2_CITSI1.301e-4690.20Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHSY_PETCR5.114e-4383.84Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHS2_RUTGR1.139e-4282.35Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHS2_DAUCA1.139e-4282.83Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHS1_RUTGR1.139e-4282.35Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHS2_MAIZE1.943e-4282.00Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1[more]
CHSY_ORYSJ2.538e-4280.39Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI2.538e-4280.39Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHS3_RUTGR9.645e-4281.37Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHS1_MAIZE1.645e-4180.00Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15D11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15D11-H22-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047623 ID=CX047623; Name=CX047623; organism=Citrus sinensis; type=EST; length=491bp
CGCTTGGCATCAGCGACTGGAACTCGATATTCTGGATCGCTCACCCCGGT
GGGCCCGCAATTCTGGACCAAGTGGAGTCTAAACTGGGCCTCAAAGGGGA
GAAGCTGAAGGCCACACGTCAAGTGTTGAGTGAGTACGGTAACATGTCAA
GCGCTTGTGTCTTGTTCATCCTTGACGAGATGAGAAAGAAGTCTGTTGAG
GAAGCGAAAGCCACCACCGGCGAAGGGCTTGATTGGGGTGTGCTGTTCGG
GTTCGGGCCGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTGTCCCCA
TCAAAGCTTGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCAGTAACT
TTATGTTGTATGCTTTCACAGTTGAGTTATTGGTTGATCGTGTGAAGGTT
TAGTTTTGTCAATTGAGTTTAAGGCATCGTGCCTTTTCTCTTATGACGTC
ACCAAACCTGGGCAACGCTTTGTGTTTATGCATAAATTCTT
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