CX047620

Overview
NameCX047620
Unique NameCX047620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047620 vs. ExPASy Swiss-Prot
Match: OLEO1_PRUDU (Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.072e-27
Identity = 59/87 (67.82%), Postives = 71/87 (81.61%), Query Frame = 3
Query:  243 VIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIADKARDMTERAKEYGQ 503
            VIAL +ATP+LV+FSP+LVPA I V L T+GFL SGG GV A+TVLSWIY YV GK PPGAD LD AR K+A KARD+ +RA+++GQ
Sbjct:   51 VIALTIATPLLVIFSPVLVPALITVALITMGFLTSGGFGVAAVTVLSWIYKYVTGKQPPGADQLDQARHKLAGKARDIKDRAEQFGQ 137          
BLAST of CX047620 vs. ExPASy Swiss-Prot
Match: OLEO1_ORYSJ (Oleosin 16 kDa OS=Oryza sativa subsp. japonica GN=OLE16 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.533e-25
Identity = 60/120 (50.00%), Postives = 77/120 (64.17%), Query Frame = 3
Query:  132 QALYEKAPSTPLAVKFLTAAXXXXXXXXXXXXXXXXXVIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIADKARDMTERAK 491
            Q   EK      A+K +TAA                 VIAL +ATPVLV+FSP+LVPAAIA+ L   GF+ SGG GV A++V SW+Y Y+ GKHPPGAD LD+A+ ++A KARD+ E A+
Sbjct:   20 QEQQEKQRFMMTALKTVTAATAGGSMLVLSGLILAGTVIALTVATPVLVIFSPVLVPAAIALALMAAGFVTSGGLGVAALSVFSWMYKYLTGKHPPGADQLDHAKARLASKARDIKEAAQ 139          
BLAST of CX047620 vs. ExPASy Swiss-Prot
Match: OLE16_BROSE (Oleosin 16 kDa OS=Bromus secalinus GN=OLE16 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.308e-25
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 3
Query:  144 EKAPSTPLAVKFLTAAXXXXXXXXXXXXXXXXXVIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIADKARDMTERAK 491
            +K P    A+K  TAA                 VIAL +ATPVLV+FSP+LVPAAI++ L + GF+ SGG GV A++V SW+Y Y+ GKHPPGAD LD+A+ ++A KARD+ + A+
Sbjct:   43 QKQPVMMCALKAATAATAGGSMLVLSGLILAGTVIALTVATPVLVIFSPVLVPAAISMALMSAGFVTSGGLGVAAVSVFSWMYKYLAGKHPPGADQLDHAKARLASKARDIKDAAQ 158          
BLAST of CX047620 vs. ExPASy Swiss-Prot
Match: OLEO1_MAIZE (Oleosin Zm-I OS=Zea mays GN=OLE16 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.238e-24
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 3
Query:  144 EKAPSTPLAVKFLTAAXXXXXXXXXXXXXXXXXVIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIADKARDMTERAK 491
            +K  +   A+K  TAA                 VIAL +ATPVLV+FSP+LVPAAIA+ L   GF+ SGG GV A++V SW+Y Y+ GKHPP AD LD+A+ ++A KARD+ + A+
Sbjct:   32 QKQGAMMTALKAATAATFGGSMLVLSGLILAGTVIALTVATPVLVIFSPVLVPAAIALALMAAGFVTSGGLGVAALSVFSWMYKYLTGKHPPAADQLDHAKARLASKARDVKDAAQ 147          
BLAST of CX047620 vs. ExPASy Swiss-Prot
Match: OLEO1_ARATH (Oleosin 18.5 kDa OS=Arabidopsis thaliana GN=At4g25140 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.238e-24
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 3
Query:  243 VIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIADKARDMTERAKEYGQ 503
            VIAL +ATP+LV+FSPILVPA I V L   GFL SGG G+ AITV SWIY Y  G+HP G+D LD AR K+  KA+D+ +RA+ YGQ
Sbjct:   68 VIALTVATPLLVIFSPILVPALITVALLITGFLSSGGFGIAAITVFSWIYKYATGEHPQGSDKLDSARMKLGSKAQDLKDRAQYYGQ 154          
BLAST of CX047620 vs. ExPASy Swiss-Prot
Match: OLEO5_BRANA (Oleosin Bn-V (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.147e-24
Identity = 55/87 (63.22%), Postives = 64/87 (73.56%), Query Frame = 3
Query:  243 VIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIADKARDMTERAKEYGQ 503
            VIALI+ATP+LV+FSPILVPA I V L   GFL SG  G+ AITV SWIY Y  G+HP G+D LD AR K+  KA+DM +RA  YGQ
Sbjct:   70 VIALIVATPLLVIFSPILVPALITVALLITGFLSSGAFGIAAITVFSWIYKYATGEHPQGSDKLDSARMKLGSKAQDMKDRAYYYGQ 156          
BLAST of CX047620 vs. ExPASy Swiss-Prot
Match: OLEO3_BRANA (Oleosin Bn-III OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.064e-23
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 3
Query:  243 VIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIADKARDMTERAKEYGQ 503
            VIAL +ATP+LV+FSPILVPA I V +   GFL SGG G+ AITV SWIY Y  G+HP G+D LD AR K+  KA+D+ +RA+ YGQ
Sbjct:   82 VIALTVATPLLVIFSPILVPALITVAMLITGFLSSGGFGIAAITVFSWIYKYATGEHPQGSDKLDSARMKLGSKAQDLKDRAQYYGQ 168          
BLAST of CX047620 vs. ExPASy Swiss-Prot
Match: OLEO2_BRANA (Major oleosin NAP-II (Fragment) OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.064e-23
Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 3
Query:  243 VIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIADKARDMTERAKEYGQ 503
            VIAL +ATP+LV+FSPILVPA I V L   GFL SGG G+ AITV SWIY Y  G+HP G+D LD AR K+  K +DM +RA+ YGQ
Sbjct:   70 VIALTVATPLLVIFSPILVPALITVALLITGFLSSGGFGIAAITVFSWIYKYATGEHPQGSDKLDSARMKLGGKVQDMKDRAQYYGQ 156          
BLAST of CX047620 vs. ExPASy Swiss-Prot
Match: OLEO2_ARATH (Oleosin 21.2 kDa OS=Arabidopsis thaliana GN=At5g40420 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.488e-17
Identity = 45/131 (34.35%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  144 EKAPSTPLAVKFLTAAXXXXXXXXXXXXXXXXXVIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIADKARDMTERAKEYGQYVQQKAQEATQ 536
            E  PS+   +  L                    VI L++A P+ +LFSP++VPAA+ + LA  GFL SG  G+T ++ +SW+ +Y++G      + L+YA+ ++AD      ++ KE GQ+VQ KAQ+  Q
Sbjct:   46 ESGPSSTQVLSLLIGVPVVGSLLALAGLLLAGSVIGLMVALPLFLLFSPVIVPAALTIGLAMTGFLASGMFGLTGLSSISWVMNYLRGTRRTVPEQLEYAKRRMADAVGYAGQKGKEMGQHVQNKAQDVKQ 176          
BLAST of CX047620 vs. ExPASy Swiss-Prot
Match: OLES2_BRANA (Oleosin S2-2 OS=Brassica napus GN=S2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.330e-17
Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:  243 VIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIADKARDMTERAKEYGQYVQQKAQEATQAS 542
            VI L+++ P+ +LFSP++VPAAI + LA    L SG  G+T ++ +SW+ +Y++G      + LDYA+ ++AD      ++ KE GQYVQ KA EA   S
Sbjct:   74 VIGLMLSVPLFLLFSPVIVPAAITIGLAVTAILASGLFGLTGLSSVSWVLNYLRGTSDTVPEQLDYAKRRMADAVGYAGQKGKEMGQYVQDKAHEAHDTS 173          
The following BLAST results are available for this feature:
BLAST of CX047620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
OLEO1_PRUDU2.072e-2767.82Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1[more]
OLEO1_ORYSJ2.533e-2550.00Oleosin 16 kDa OS=Oryza sativa subsp. japonica GN=... [more]
OLE16_BROSE3.308e-2549.14Oleosin 16 kDa OS=Bromus secalinus GN=OLE16 PE=2 S... [more]
OLEO1_MAIZE6.238e-2448.28Oleosin Zm-I OS=Zea mays GN=OLE16 PE=2 SV=2[more]
OLEO1_ARATH6.238e-2462.07Oleosin 18.5 kDa OS=Arabidopsis thaliana GN=At4g25... [more]
OLEO5_BRANA8.147e-2463.22Oleosin Bn-V (Fragment) OS=Brassica napus PE=2 SV=... [more]
OLEO3_BRANA1.064e-2360.92Oleosin Bn-III OS=Brassica napus PE=2 SV=1[more]
OLEO2_BRANA1.064e-2362.07Major oleosin NAP-II (Fragment) OS=Brassica napus ... [more]
OLEO2_ARATH1.488e-1734.35Oleosin 21.2 kDa OS=Arabidopsis thaliana GN=At5g40... [more]
OLES2_BRANA4.330e-1742.00Oleosin S2-2 OS=Brassica napus GN=S2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15D03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15D03-H6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047620 ID=CX047620; Name=CX047620; organism=Citrus sinensis; type=EST; length=791bp
TTAATTTCTTTCTCTATTGCTTCCCCGGCACATTCTTCAGATCAGCATCA
TTCATCACCAATCAATTAATTAACAAAAACAGTCGTCCATCATAATACCA
TATCATGTCTGATCAATCAAGACCGATGACCCAGGCGCTCTACGAGAAAG
CGCCGTCTACGCCGCTGGCGGTGAAGTTCTTGACAGCAGCCACAATAGGC
GGGACACTGTTATTCTTGTCAGGATTAACCTTAACCGGGACAGTGATAGC
CCTAATCATGGCTACTCCAGTTCTAGTCCTGTTCAGCCCAATCTTAGTCC
CGGCTGCAATAGCAGTGTTCTTGGCCACTGTCGGATTCTTGGTCTCCGGC
GGGTGTGGCGTAACTGCAATAACTGTGTTGTCGTGGATATACAGTTACGT
GAAAGGAAAGCACCCACCTGGGGCGGACCATCTGGATTATGCGAGAACCA
AGATAGCTGACAAGGCTAGGGATATGACGGAGAGAGCTAAAGAGTATGGG
CAGTATGTGCAGCAGAAGGCTCAGGAGGCCACTCAGGCTTCTTAAATATA
TATTGCGGCCAATGTTCTTGAGGTCATTAGGTGGTTATGGTTTGTTTAAT
TTCATGTGGTGATGTGTTTTGATTTGGTGATTTTTTTTTTCATCATGTGT
TGTGTTTATGCATGCATGCATGCTTGGGTATTGACGTGGTTCCTTCTGTA
ACTCGAGGATTAATTTTCTTGTTAACAAATGTGTGTCTGTGGTTTTTTTT
TTTTTAAATATTGATTTATAATTAAGCCTATAAAAAAACCT
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