CX047618

Overview
NameCX047618
Unique NameCX047618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.066e-80
Identity = 139/151 (92.05%), Postives = 145/151 (96.03%), Query Frame = 3
Query:   45 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 497
            SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT+NKVGGFLQRMDL RKYAFGKML+IGSEPPFKVKGLWLFRG EIP+F+MDE YDMELY+W KVDI+DEAQKERVS MIED EPFEGEALLDAKCFK
Sbjct:  268 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGEALLDAKCFK 418          
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.374e-80
Identity = 138/151 (91.39%), Postives = 145/151 (96.03%), Query Frame = 3
Query:   45 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 497
            SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT+NKVGGFLQRMDL RKYAFGKML+IGSEPPFKVKGLWLFRG EIP+F+MDE YDMELY+W KVDI+DEAQKERVS MIED EPFEGE+LLDAKCFK
Sbjct:  268 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGESLLDAKCFK 418          
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.101e-80
Identity = 135/151 (89.40%), Postives = 146/151 (96.69%), Query Frame = 3
Query:   45 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 497
            S M+LD+WKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFC+YKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKML+IGSEPPFKVKGLWLFRGQEIP F+M+ECYDMELY+W KVD++DE QKERV+Q+IED EPFEGEALLDAKCFK
Sbjct:  272 SNMVLDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPPFVMEECYDMELYNWTKVDLSDENQKERVNQVIEDQEPFEGEALLDAKCFK 422          
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.625e-79
Identity = 134/151 (88.74%), Postives = 144/151 (95.36%), Query Frame = 3
Query:   45 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 497
            SKMILDEWKRLYSNTKTNFRE+AIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT+NKVGGFLQRMDL RKYAFGKML+IGS PPFKVKGLWLFRGQ+IP+F+MDE YDMELY+W KVD++DEAQKERV+ MIED EPFEGE LLDAKCFK
Sbjct:  266 SKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIPKFVMDEVYDMELYEWTKVDLSDEAQKERVNAMIEDQEPFEGEDLLDAKCFK 416          
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.790e-78
Identity = 136/151 (90.07%), Postives = 143/151 (94.70%), Query Frame = 3
Query:   45 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 497
            S M+LD+WKRLYSNTK+NFREVAIKGFWDMYDPEGYSLWFCDYKYNDEN VSFVTLNKVGGFLQRMDLARKY+FGKMLI GSE PFKVKGLWLFRG EIP+FIMDE YDMELY+W KVDI+DEAQKERVSQMIED EPFEGEALLDAKCFK
Sbjct:  263 SPMVLDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 413          
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.790e-78
Identity = 136/151 (90.07%), Postives = 143/151 (94.70%), Query Frame = 3
Query:   45 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 497
            S M+LD+WKRLYSNTK+NFREVAIKGFWDMYDPEGYSLWFCDYKYNDEN VSFVTLNKVGGFLQRMDLARKY+FGKMLI GSE PFKVKGLWLFRG EIP+FIMDE YDMELY+W KVDI+DEAQKERVSQMIED EPFEGEALLDAKCFK
Sbjct:  264 SPMVLDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 414          
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G_TRYCR (Elongation factor 1-gamma OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26
Identity = 63/151 (41.72%), Postives = 94/151 (62.25%), Query Frame = 3
Query:   45 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 497
            S  +LD +KR YSNT T  R VA   F+  YD  GY+ ++C YKYN++N + F+T N + G+ QRM+  RKYAFG  LIIG E    +  LW+FRG+ +P  I+++  D EL+DW++V  +  AQ+ER++  +    P     +L+ + FK
Sbjct:  265 SPFVLDAFKREYSNTDT--RTVAAPYFFQHYDAAGYTTFWCRYKYNEDNKMQFMTANLIRGWFQRMEHVRKYAFGVALIIGEERRHDIVALWVFRGRGMPA-IVEDVEDTELFDWEEV-ADVAAQRERITDYLSWEGPTIPRPVLEGRVFK 411          
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G_CARAU (Elongation factor 1-gamma OS=Carassius auratus GN=eef1g PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24
Identity = 55/144 (38.19%), Postives = 91/144 (63.19%), Query Frame = 3
Query:   45 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECY--DMELYDWKKVDINDEAQKERVSQMIEDHEPFEGE 470
            S  ++DE+KR YSN  T    VA+  FWD +D EG+S+W+ +Y++ +E T+SF++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQE+  F + E +  D E Y W+K+D++ E  K     M++++  +EGE
Sbjct:  291 SSFVMDEFKRKYSNEDT--LTVALPYFWDHFDREGFSIWYAEYRFPEELTMSFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQEL-AFTLSEDWQIDYESYTWRKLDVDSEECK----TMVKEYFAWEGE 427          
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G1_YEAST (Elongation factor 1-gamma 1 OS=Saccharomyces cerevisiae GN=CAM1 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 62/156 (39.74%), Postives = 90/156 (57.69%), Query Frame = 3
Query:   45 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQE-IPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPF----EGEALLDAKCFK 497
            S  +LD+WKR YSN  T  R VA+  FW+ Y+PE YSLW   YKYNDE T++F++ N VGGF  R+  + KY FG +++ G      + G  + RGQ+ +P F  D   D E YD+ K+D  ++  KE ++ M    +P     E + ++D K  K
Sbjct:  264 STFVLDDWKRKYSNEDT--RPVALPWFWEHYNPEEYSLWKVTYKYNDELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDYVPAF--DVAPDWESYDYAKLDPTNDDDKEFINNMWAWDKPVSVNGEPKEIVDGKVLK 415          
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G_DANRE (Elongation factor 1-gamma OS=Danio rerio GN=eef1g PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23
Identity = 52/143 (36.36%), Postives = 90/143 (62.94%), Query Frame = 3
Query:   45 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDEC-YDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGE 470
            S  ++DE+KR YSN  T    VA+  FWD +D EG+S+W+ +Y++ +E T++F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQ++   + D+   D E Y W+K+D++ E  K     M++++  +EGE
Sbjct:  291 SSFVMDEFKRKYSNEDT--MTVALPYFWDHFDREGFSIWYAEYRFPEELTMAFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQDLAFPLSDDWQIDYESYTWRKLDVDSEECK----TMVKEYFAWEGE 427          
The following BLAST results are available for this feature:
BLAST of CX047618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EF1G1_ORYSJ1.066e-8092.05Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G2_ORYSJ2.374e-8091.39Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G_PRUAV3.101e-8089.40Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G3_ORYSJ2.625e-7988.74Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G2_ARATH3.790e-7890.07Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G1_ARATH3.790e-7890.07Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G_TRYCR3.367e-2641.72Elongation factor 1-gamma OS=Trypanosoma cruzi PE=... [more]
EF1G_CARAU4.116e-2438.19Elongation factor 1-gamma OS=Carassius auratus GN=... [more]
EF1G1_YEAST9.169e-2439.74Elongation factor 1-gamma 1 OS=Saccharomyces cerev... [more]
EF1G_DANRE1.198e-2336.36Elongation factor 1-gamma OS=Danio rerio GN=eef1g ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_15D02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15D02-H4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047618 ID=CX047618; Name=CX047618; organism=Citrus sinensis; type=EST; length=725bp
CACCAAAGCCCAAGCCAAAGAATCCACTTGACCTTTTGCCTCCCAGCAAG
ATGATTTTGGATGAGTGGAAGAGGTTGTACTCAAACACAAAGACCAACTT
TCGTGAGGTTGCCATTAAAGGATTTTGGGACATGTATGATCCGGAGGGCT
ACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAGAATACAGTCTCA
TTTGTGACTTTGAACAAAGTGGGCGGATTCCTGCAGCGAATGGACTTGGC
TCGTAAGTATGCTTTTGGGAAGATGCTGATTATTGGCTCGGAGCCACCTT
TCAAGGTAAAGGGTTTGTGGCTTTTCCGTGGACAAGAGATTCCTCAATTT
ATAATGGACGAGTGTTACGACATGGAGTTGTATGATTGGAAGAAGGTGGA
CATCAATGATGAAGCTCAGAAGGAGCGTGTAAGCCAGATGATCGAAGATC
ATGAACCTTTCGAGGGTGAGGCCTTGTTAGATGCCAAGTGCTTCAAGTGA
GATCATCCAGACGGACCAGACCGGAGAAGTAGCTGGTGTGTGTGTGTAAT
GCTGTTGCAATCATTTAAGTTTTCTAATTTTTCATCTTTAGTTTTGTGCT
GTTAGCAAATTGACCCTATTTAAGCATTCAATTGACTTTGATTTAAATAC
ATCAGAACTTTCTAGTTAATTTTCATATTACATTCATGTTTTTGTTTAAA
GTCAATAATGTTGGGATTACAAGGG
back to top