CX047616

Overview
NameCX047616
Unique NameCX047616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_MACFA (Fatty acid desaturase 2 OS=Macaca fascicularis GN=FADS2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.716e-13
Identity = 45/137 (32.85%), Postives = 65/137 (47.45%), Query Frame = -2
Query:  337 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 747
            I+G L+F  +   L S+   W            VT + HI   ++  A           DWF  Q + T ++  S + DWF G L FQ+EHHLFP +PR  L KI P+V+  C K  + Y+      A +  +R+LR
Sbjct:  316 ILGALLFLNFIRFLESHWFVW------------VTQMNHIVMEIDQEAYR---------DWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLR 431          
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS3_BOVIN (Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.339e-13
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = -2
Query:  337 LNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 618
            +NH    +  G  K  DW   Q + T ++  S ++DWF G L FQ+EHHLFP +PR   R++ P+V+  C K  + Y    F  A V  +R+L+
Sbjct:  339 MNHIPREI--GHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKALCAKHGLSYEVKPFLTALVDIIRSLK 430          
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS3_HUMAN (Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.279e-13
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = -2
Query:  337 NIMGTLVFWTWFPLL----------VSYLPNW--PERVMFVMASFTVTAIQHIQFC-LNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 750
            N+   LV   W  LL          +SYLP +  P  ++F +A   + +   +    +NH    +  G  K  DW   Q + T ++  S + +WF G L FQ+EHHLFPR+PR    ++ P+V+  C K  + Y    F  A V  +R+L+
Sbjct:  284 NLAYMLVCMQWADLLWAASFYARFFLSYLPFYGVPGVLLFFVAVRVLESHWFVWITQMNHIPKEI--GHEKHRDWVSSQLAATCNVEPSLFTNWFSGHLNFQIEHHLFPRMPRHNYSRVAPLVKSLCAKHGLSYEVKPFLTALVDIVRSLK 432          
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_RAT (Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fads2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.279e-13
Identity = 44/130 (33.85%), Postives = 61/130 (46.92%), Query Frame = -2
Query:  364 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHI--QFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEA 747
            I+G LVF  +   L S+   W            VT + HI  +  L+H+            DWF  Q + T ++  S + DWF G L FQ+EHHLFP +PR  L KI P+V+  C K  + Y+      A
Sbjct:  316 ILGALVFLNFIRFLESHWFVW------------VTQMNHIVMEIDLDHY-----------RDWFSSQLAATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRA 422          
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_PONAB (Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.279e-13
Identity = 44/137 (32.12%), Postives = 65/137 (47.45%), Query Frame = -2
Query:  337 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 747
            I+G L+F  +   L S+   W            VT + HI   ++  A           DWF  Q + T ++  S + DWF G L FQ+EHHLFP +PR  L KI P+V+  C K  + Y+      A +  +R+L+
Sbjct:  316 ILGALLFLNFIRFLESHWFVW------------VTQMNHIVMEIDQEAYR---------DWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLK 431          
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_MOUSE (Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.279e-13
Identity = 44/139 (31.65%), Postives = 66/139 (47.48%), Query Frame = -2
Query:  337 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHI--QFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 747
            I+G LVF  +   L S+   W            VT + H+  +  L+H+            DWF  Q + T ++  S + DWF G L FQ+EHHLFP +PR  L KI P+V+  C K  + Y+      A +  + +L+
Sbjct:  316 ILGALVFLNFIRFLESHWFVW------------VTQMNHLVMEIDLDHY-----------RDWFSSQLAATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALIDIVSSLK 431          
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_HUMAN (Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.279e-13
Identity = 44/137 (32.12%), Postives = 65/137 (47.45%), Query Frame = -2
Query:  337 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 747
            I+G L+F  +   L S+   W            VT + HI   ++  A           DWF  Q + T ++  S + DWF G L FQ+EHHLFP +PR  L KI P+V+  C K  + Y+      A +  +R+L+
Sbjct:  316 ILGALLFLNFIRFLESHWFVW------------VTQMNHIVMEIDQEAYR---------DWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLK 431          
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS3_RAT (Fatty acid desaturase 3 OS=Rattus norvegicus GN=Fads3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.081e-12
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = -2
Query:  337 LNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 618
            +NH    +  G  K  DW   Q + T ++  S ++DWF G L FQ+EHHLFP +PR   R++ P+V+ FC K  + Y    F  A V  + +L+
Sbjct:  345 MNHIPKEI--GHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKAFCAKHGLHYEVKPFLTALVDIIGSLK 436          
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS3_MOUSE (Fatty acid desaturase 3 OS=Mus musculus GN=Fads3 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.081e-12
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = -2
Query:  337 LNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 618
            +NH    +  G  K  DW   Q + T ++  S ++DWF G L FQ+EHHLFP +PR   R++ P+V+ FC K  + Y    F  A V  + +L+
Sbjct:  345 MNHIPKEI--GHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKAFCAKHGLHYEVKPFLTALVDIIGSLK 436          
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_XENLA (Fatty acid desaturase 2 OS=Xenopus laevis GN=fads2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.844e-12
Identity = 38/104 (36.54%), Postives = 51/104 (49.04%), Query Frame = -2
Query:  337 VTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 648
            VT + H+   + H          K  DW   Q + T +I  S + DWF G L FQ+EHHLFP +PR    KI P+VR  C K N+ Y     +      LR+L+
Sbjct:  339 VTQMNHLPMAIEH---------EKYQDWLNTQLAATCNIEPSFFNDWFSGHLNFQIEHHLFPTMPRHNYWKIAPLVRSLCSKYNVTYEEKCLYHGFRDVLRSLK 433          
The following BLAST results are available for this feature:
BLAST of CX047616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
FADS2_MACFA3.716e-1332.85Fatty acid desaturase 2 OS=Macaca fascicularis GN=... [more]
FADS3_BOVIN6.339e-1337.23Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=... [more]
FADS3_HUMAN8.279e-1331.13Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 P... [more]
FADS2_RAT8.279e-1333.85Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fa... [more]
FADS2_PONAB8.279e-1332.12Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 P... [more]
FADS2_MOUSE8.279e-1331.65Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 P... [more]
FADS2_HUMAN8.279e-1332.12Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 P... [more]
FADS3_RAT1.081e-1237.23Fatty acid desaturase 3 OS=Rattus norvegicus GN=Fa... [more]
FADS3_MOUSE1.081e-1237.23Fatty acid desaturase 3 OS=Mus musculus GN=Fads3 P... [more]
FADS2_XENLA1.844e-1236.54Fatty acid desaturase 2 OS=Xenopus laevis GN=fads2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15C12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15C12-F24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047616 ID=CX047616; Name=CX047616; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTTAAAAAAAAAAAAAAAGGCTTAATTGAATCCCCG
AGTCATTATCTGATTACAACTGGGAATAAAAAAATATTGCTAAAAAGAGC
ATTTATTCATCATCCTATACAAATGACGACCCCAAGCCAAGAGGCCAAAT
CAAGAGCCAAAAAAATATTCGTTGGGGGCAAAATAACTTGGGGCTATAAA
ATCTCGATAGGCATCTGTTAATGTATTTTATATATTAAAAAAAAAAAAAC
ACAACTCACCCATGAGTATTAAAAGCTTCCCAAAGCAAATTCTTGGGGAC
AGGGTTTGGGAGGTCCCGAGCTTGCAAAACAACCCCCCTCAAAGTCCTAA
GGGTCCACACATTGGCCTCAAAAAAGGACAAACTTCTGTAAGGCATATTG
GGCTTCTTGCAAAAATCCCTCACCACCGGCAAAATCTTCCTCAATTGGCA
CCTTGGCAACCTTGGAAACAAATGATGCTCTAGCTGAAACTGCAACCCAC
CATGAAACCAATCCATCCAAGATGAGCAAGCAATATCCAATGTCCCACTT
GTTTGCTTCTCAAACCAGTCATTCCCTTTAGGCGGACCAAAATACACGTT
TGCAGCAAAGTGGTTTAAACAAAACTGAATGTGTTGGATGGCCGTGACAG
TAAAACTTGCCATCACAAACATCACCCTTTCAGGCCAGTTTGGTAGATAT
GAAACTAGAAGTGGGAACCAAGTCCAAAAGACAAGAGTACCCATGATGTT
CAAGGCTCTATCTGGGACCTTACGCTTTGAA
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