CX047616
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_MACFA (Fatty acid desaturase 2 OS=Macaca fascicularis GN=FADS2 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.716e-13 Identity = 45/137 (32.85%), Postives = 65/137 (47.45%), Query Frame = -2 Query: 337 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 747 I+G L+F + L S+ W VT + HI ++ A DWF Q + T ++ S + DWF G L FQ+EHHLFP +PR L KI P+V+ C K + Y+ A + +R+LR Sbjct: 316 ILGALLFLNFIRFLESHWFVW------------VTQMNHIVMEIDQEAYR---------DWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLR 431
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS3_BOVIN (Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.339e-13 Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = -2 Query: 337 LNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 618 +NH + G K DW Q + T ++ S ++DWF G L FQ+EHHLFP +PR R++ P+V+ C K + Y F A V +R+L+ Sbjct: 339 MNHIPREI--GHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKALCAKHGLSYEVKPFLTALVDIIRSLK 430
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS3_HUMAN (Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.279e-13 Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = -2 Query: 337 NIMGTLVFWTWFPLL----------VSYLPNW--PERVMFVMASFTVTAIQHIQFC-LNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 750 N+ LV W LL +SYLP + P ++F +A + + + +NH + G K DW Q + T ++ S + +WF G L FQ+EHHLFPR+PR ++ P+V+ C K + Y F A V +R+L+ Sbjct: 284 NLAYMLVCMQWADLLWAASFYARFFLSYLPFYGVPGVLLFFVAVRVLESHWFVWITQMNHIPKEI--GHEKHRDWVSSQLAATCNVEPSLFTNWFSGHLNFQIEHHLFPRMPRHNYSRVAPLVKSLCAKHGLSYEVKPFLTALVDIVRSLK 432
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_RAT (Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fads2 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.279e-13 Identity = 44/130 (33.85%), Postives = 61/130 (46.92%), Query Frame = -2 Query: 364 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHI--QFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEA 747 I+G LVF + L S+ W VT + HI + L+H+ DWF Q + T ++ S + DWF G L FQ+EHHLFP +PR L KI P+V+ C K + Y+ A Sbjct: 316 ILGALVFLNFIRFLESHWFVW------------VTQMNHIVMEIDLDHY-----------RDWFSSQLAATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRA 422
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_PONAB (Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.279e-13 Identity = 44/137 (32.12%), Postives = 65/137 (47.45%), Query Frame = -2 Query: 337 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 747 I+G L+F + L S+ W VT + HI ++ A DWF Q + T ++ S + DWF G L FQ+EHHLFP +PR L KI P+V+ C K + Y+ A + +R+L+ Sbjct: 316 ILGALLFLNFIRFLESHWFVW------------VTQMNHIVMEIDQEAYR---------DWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLK 431
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_MOUSE (Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.279e-13 Identity = 44/139 (31.65%), Postives = 66/139 (47.48%), Query Frame = -2 Query: 337 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHI--QFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 747 I+G LVF + L S+ W VT + H+ + L+H+ DWF Q + T ++ S + DWF G L FQ+EHHLFP +PR L KI P+V+ C K + Y+ A + + +L+ Sbjct: 316 ILGALVFLNFIRFLESHWFVW------------VTQMNHLVMEIDLDHY-----------RDWFSSQLAATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALIDIVSSLK 431
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_HUMAN (Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.279e-13 Identity = 44/137 (32.12%), Postives = 65/137 (47.45%), Query Frame = -2 Query: 337 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 747 I+G L+F + L S+ W VT + HI ++ A DWF Q + T ++ S + DWF G L FQ+EHHLFP +PR L KI P+V+ C K + Y+ A + +R+L+ Sbjct: 316 ILGALLFLNFIRFLESHWFVW------------VTQMNHIVMEIDQEAYR---------DWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLK 431
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS3_RAT (Fatty acid desaturase 3 OS=Rattus norvegicus GN=Fads3 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.081e-12 Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = -2 Query: 337 LNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 618 +NH + G K DW Q + T ++ S ++DWF G L FQ+EHHLFP +PR R++ P+V+ FC K + Y F A V + +L+ Sbjct: 345 MNHIPKEI--GHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKAFCAKHGLHYEVKPFLTALVDIIGSLK 436
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS3_MOUSE (Fatty acid desaturase 3 OS=Mus musculus GN=Fads3 PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.081e-12 Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = -2 Query: 337 LNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 618 +NH + G K DW Q + T ++ S ++DWF G L FQ+EHHLFP +PR R++ P+V+ FC K + Y F A V + +L+ Sbjct: 345 MNHIPKEI--GHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKAFCAKHGLHYEVKPFLTALVDIIGSLK 436
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_XENLA (Fatty acid desaturase 2 OS=Xenopus laevis GN=fads2 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.844e-12 Identity = 38/104 (36.54%), Postives = 51/104 (49.04%), Query Frame = -2 Query: 337 VTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 648 VT + H+ + H K DW Q + T +I S + DWF G L FQ+EHHLFP +PR KI P+VR C K N+ Y + LR+L+ Sbjct: 339 VTQMNHLPMAIEH---------EKYQDWLNTQLAATCNIEPSFFNDWFSGHLNFQIEHHLFPTMPRHNYWKIAPLVRSLCSKYNVTYEEKCLYHGFRDVLRSLK 433 The following BLAST results are available for this feature:
BLAST of CX047616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047616 ID=CX047616; Name=CX047616; organism=Citrus sinensis; type=EST; length=781bpback to top |