CX047615

Overview
NameCX047615
Unique NameCX047615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS2_PONAB (Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.339e-21
Identity = 67/225 (29.78%), Postives = 104/225 (46.22%), Query Frame = 1
Query:  157 QSAALMEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFV-----QDF-EVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            + AA  E      + EE++ HN   D W+ I  KVY++T+W+ QHPGG   + + AG+D TDAF A+HP   +  ++L  L  G        QD  + S+I++D+R L        +F+         L  +  +  +  + V    + W + L +  +L     Q+ ++ HD GH  V   PK+N +        L G S  WW   H  HH   N    DPD+
Sbjct:    9 EGAAEREVSVPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVIGHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTAEDMNLFKTNHVFFLLLLAHIIALESIAWFTVFYFGNGWISTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHLVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDV 233          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS2_HUMAN (Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.054e-21
Identity = 72/236 (30.51%), Postives = 110/236 (46.61%), Query Frame = 1
Query:  157 QSAALMEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFV-----QDF-EVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESV-W---AHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            + AA  E      + EE++ HN   D W+ I  KVY++T+W+ QHPGG   + + AG+D TDAF A+HP   +  ++L  L  G        QD  + S+I++D+R L        +F K  HV           F++++  ++  ES+ W    + G+G         +L     Q+ ++ HD GH  V   PK+N +        L G S  WW   H  HH   N    DPD+
Sbjct:    9 EGAAEREVSVPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVIGHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTAEDMNLF-KTNHV----------FFLLLLAHIIALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHLVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDV 233          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS2_MACFA (Fatty acid desaturase 2 OS=Macaca fascicularis GN=FADS2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.989e-21
Identity = 72/236 (30.51%), Postives = 109/236 (46.19%), Query Frame = 1
Query:  157 QSAALMEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFV-----QDF-EVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESV-W---AHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            + AA  E      + EE++ HN   D W+ I  KVY++T+W+ QHPGG   + + AG+D TDAF A+HP   +  ++L  L  G        QD  + S+I +D+R L        +F K  HV           F++++  ++  ES+ W    + G+G         +L     Q+ ++ HD GH  V   PK+N +        L G S  WW   H  HH   N    DPD+
Sbjct:    9 EGAAEREVPMPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSTQHPGGQRVIGHYAGEDATDAFRAFHPDLKFVGKFLKPLLIGELAPEEPSQDHGKNSKIIEDFRALKKTAEDMNLF-KTNHV----------FFLLLLAHIIALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHLVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDV 233          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS1_PAPAN (Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.980e-20
Identity = 64/233 (27.47%), Postives = 110/233 (47.21%), Query Frame = 1
Query:  148 PIFQSAALMEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQD---FEVS---EISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGV------LCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            P+     +     +Y T +E+   +  E+ W+ I  KVYD++E+ ++HPGG   + + AGQD TD F+A+H   G   +Y++ L  G    +   FE +   E++ ++R L     + G+  K  HV       + L+ ++++ G       +   S    L   +LL    IQ+ ++ HD GH  V ++ K+N +        L G+  +WW   H  HH   N    DPD+
Sbjct:    5 PVAAKTPVQGPTPRYFTWDEVAQRSGCEERWLVIDRKVYDISEFTRRHPGGSRVISHYAGQDATDPFVAFHSNKGLVKKYMNSLLIGELSPEQPSFEPTKNKELTDEFRELRATVEQMGLM-KANHV----FFLLYLLHILLLDGAAWLTLWIFGTSFLPFLLCAVLLTAAQIQAGWLQHDLGHLSVFSTSKWNHLVHHFVIGHLKGVPASWWNHMHFQHHAKPNCFGKDPDI 232          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS2_DANRE (Fatty acid desaturase 2 OS=Danio rerio GN=fads2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 63/214 (29.44%), Postives = 98/214 (45.79%), Query Frame = 1
Query:  196 TAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEVSEIS----------KDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAH-LGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            T EE++ H K  D W+ ++ KVY+V++W K+HPGG   L + AG+D T+AF A+HP    Q + K      + + E SE S          +D+R L      +G F+ +    +  L  + L+  +    V    + W + L   ++L     Q+ ++ HD GH  V  +   N +        L G S  WW   H  HH   N    DPD+
Sbjct:   22 TWEEVQKHTKHGDQWVVVERKVYNVSQWVKRHPGGLRILGHYAGEDATEAFTAFHPNL--QLVRKYLKPLLIGELEASEPSQDRQKNAALVEDFRALRERLEAEGCFKTQPLFFALHLGHILLLEAIAFMMVWYFGTGWINTLIVAVILATAQSQAGWLQHDFGHLSVFKTSGMNHLVHKFVIGHLKGASAGWWNHRHFQHHAKPNIFKKDPDV 233          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS2_XENLA (Fatty acid desaturase 2 OS=Xenopus laevis GN=fads2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.676e-19
Identity = 63/224 (28.12%), Postives = 101/224 (45.09%), Query Frame = 1
Query:  202 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQDFEVSEISK------DYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESV-WA---HLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHI 813
            EE++ HN   D W+ I+ KVY++++W K+HPGG   + + AG+D TDAF A+HP   +  ++L  L+ G   ++    +  K      D+R L        +F+                F+  ++ +L  E + W    +LG+G        +LL     Q+ ++ HD GH  V    K+N +        L G S  WW   H  HH   N    DPD+  +
Sbjct:   26 EEIQKHNLKTDKWLVIERKVYNISQWVKRHPGGMRIIGHYAGEDATDAFHAFHPDKTFVRKFLKPLYIGELAENEPSQDRDKNAQQVEDFRALRKTAEDMRLFKSN-----------PAFFIFYLFHILLIEFLAWCTLHYLGTGWIPAIITVLLLTISQAQAGWLQHDFGHLSVFEKSKWNHLVHKFVIGHLKGASANWWNHRHFQHHAKPNIFSKDPDVNMV 238          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS1_HUMAN (Fatty acid desaturase 1 OS=Homo sapiens GN=FADS1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.676e-19
Identity = 62/232 (26.72%), Postives = 106/232 (45.69%), Query Frame = 1
Query:  148 PIFQSAALMEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQD---FEVS---EISKDYRRLYIEFAKQGMFEKKQ-----HVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            P+    A      +Y T +E+   +  E+ W+ I  KVY+++E+ ++HPGG   + + AGQD TD F+A+H   G   +Y++ L  G    +   FE +   E++ ++R L     + G+ +        ++    L   A    + V+G     S    L   +LL  +  Q+ ++ HD GH  V ++ K+N +        L G   +WW   H  HH   N    DPD+
Sbjct:    5 PVAAETAAQGPTPRYFTWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPGGSRVISHYAGQDATDPFVAFHINKGLVKKYMNSLLIGELSPEQPSFEPTKNKELTDEFRELRATVERMGLMKANHVFFLLYLLHILLLDGAAWLTLWVFGT----SFLPFLLCAVLLSAVQAQAGWLQHDFGHLSVFSTSKWNHLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDI 232          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS2_BOVIN (Fatty acid desaturase 2 OS=Bos taurus GN=FADS2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.189e-19
Identity = 61/225 (27.11%), Postives = 101/225 (44.89%), Query Frame = 1
Query:  157 QSAALMEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQD------FEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            + A  +EA       EE++ HN   D W+ I  KVY++T+W+ +HPGG   + + AG+D TDAF+A+H    +  +++  L  G    +       + S+I++D+R L        +F+  Q      L  +  M  +  + +    + W   + +  +L     Q+ ++ HD GH  V     +N I        L G S  WW   H  HH   N    DPD+
Sbjct:    9 EGATELEAPMPTFRWEEIQKHNLRTDKWLVIDRKVYNITKWSSRHPGGQRVIGHYAGEDATDAFLAFHRNLDFVRKFMKPLLIGELAPEEPSQDRGKNSQITEDFRALRKTAEDMNLFKSNQLFFLLHLAHIIAMESIAWFTLFYFGNGWIPTIITAFVLATSQAQAGWLQHDYGHLSVYKKSMWNHIVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDV 233          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FAD2L_MOUSE (Fatty acid desaturase 2-like protein OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.734e-19
Identity = 66/217 (30.41%), Postives = 97/217 (44.70%), Query Frame = 1
Query:  196 TAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQDFEVSEISK------DYRRLYIEFAKQGMFEKK-----QHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            T +E++ H++  D W+ I  KVY+VT+WA +HPGG   L + AGQD TDAF A H   G    YL  L  G    +    E +K      D+R L        MF         H+A   +  ++   ++  +G     S W   +    LL     Q +++ HD GH  +    K+N +        L G+S  WW + H  HH+  N    DPD+
Sbjct:   66 TWQEIQRHSQEADQWLVIDRKVYNVTDWAGKHPGGRRVLNHYAGQDATDAFRAMHLDLGMVKLYLKPLLIGELSPEEPSQEKNKNAQLVEDFRELRKTLEAMNMFSANLRFFFLHLAQILILEISAWLILHHFG-----SSWLVTILISFLLTVSQAQCSFLQHDLGHLSMFKKSKWNHLMHKFVMCHLKGLSADWWNYRHFQHHVKPNIYPKDPDI 277          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS3_BOVIN (Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.369e-19
Identity = 58/210 (27.62%), Postives = 97/210 (46.19%), Query Frame = 1
Query:  202 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQDF------EVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWA-HLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            E++R HN   D W+ I+ +VYD++ WA++HPGG   + +   +D TDAF A+H   ++  ++L  L  G    +       + +++ +D+R L        +FE K       L  +  M V+    +      W     + ++L     QS  + HD GH  +  + ++N +AQ      L G S  WW + H  HH   N    DPD+
Sbjct:   24 EQVRRHNLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFHAFHQDLSFVRKFLQPLLIGELAPEEPSQDGPQNTQLIEDFRALRQAVEDMKLFEAKPAFFGLLLGHILAMEVLAWLMIYMLGPGWVPSTLAALILAISQAQSWCLQHDLGHTSIFRNSRWNHLAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDV 233          
The following BLAST results are available for this feature:
BLAST of CX047615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FADS2_PONAB2.339e-2129.78Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 P... [more]
FADS2_HUMAN3.054e-2130.51Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 P... [more]
FADS2_MACFA3.989e-2130.51Fatty acid desaturase 2 OS=Macaca fascicularis GN=... [more]
FADS1_PAPAN1.980e-2027.47Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 P... [more]
FADS2_DANRE3.377e-2029.44Fatty acid desaturase 2 OS=Danio rerio GN=fads2 PE... [more]
FADS2_XENLA1.676e-1928.13Fatty acid desaturase 2 OS=Xenopus laevis GN=fads2... [more]
FADS1_HUMAN1.676e-1926.72Fatty acid desaturase 1 OS=Homo sapiens GN=FADS1 P... [more]
FADS2_BOVIN2.189e-1927.11Fatty acid desaturase 2 OS=Bos taurus GN=FADS2 PE=... [more]
FAD2L_MOUSE3.734e-1930.41Fatty acid desaturase 2-like protein OS=Mus muscul... [more]
FADS3_BOVIN6.369e-1927.62Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_15C12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15C12-F24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047615 ID=CX047615; Name=CX047615; organism=Citrus sinensis; type=EST; length=813bp
GAAAAAATAAAAATAGAGATCTCAAAAACCGAAAGCAAACCAAATCATCA
CATCCCTTGCTATTTCACTTTGAGCAAAACTTGCGGGATTTTCTTGATTT
GATTTTGCTTCCCAGGTGGCATAACCTATCTTCCCCCACAACACTTTCCA
ATTTTTCAATCTGCTGCCTTAATGGAGGCCGAGAAAAAATACATAACGGC
TGAAGAGCTTAGAACCCACAACAAGGCAGAAGATTTGTGGATCTCTATAC
AGGGGAAAGTTTACGACGTTACAGAATGGGCAAAACAACATCCTGGCGGC
GACGTTCCGCTCTTGAATTTGGCTGGCCAAGATGTAACCGATGCGTTTAT
AGCGTATCATCCAGGAACCGCTTGGCAATATCTTGATAAACTTTTTACAG
GCTATTTTGTTCAAGATTTCGAAGTATCTGAAATCTCAAAAGATTACAGG
AGACTGTACATTGAGTTTGCCAAACAGGGTATGTTTGAAAAGAAACAACA
CGTGGCATCCTGTGCCCTTACATGTGTAGCATTGATGTTTGTTGTTGTGG
TTTATGGCGTTTTGTGCTGTGAGAGCGTCTGGGCTCATTTGGGTTCAGGC
ATGTTGTTGGGGTTTCTTTGGATTCAAAGTGCTTATGTTGGTCACGATTC
CGGGCATTATCAGGTTATGACAAGTCCTAAGTTTAACAAAATTGCTCAGC
TTATTTCAGGAAATTGTTTAACAGGAATCAGCATTGCTTGGTGGAAGTGG
ACTCACAATGCCCACCACATTGCTTGCAACAGCCTTGATTACGATCCAGA
TCTTCAACACATC
back to top