CX047610

Overview
NameCX047610
Unique NameCX047610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047610 vs. ExPASy Swiss-Prot
Match: PP310_ARATH (Pentatricopeptide repeat-containing protein At4g14190, chloroplastic OS=Arabidopsis thaliana GN=At4g14190 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.102e-50
Identity = 104/173 (60.12%), Postives = 124/173 (71.68%), Query Frame = -1 
Query:  280 FSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYS-SLEPYSREKKRWTYQNLIDLVIK 792
            FSRLDDLG  + ASR  RTEL WCLRLL HA L+S +G+D VV+EME A+V WN T ANI LLAY KM DF  + +LLSEL  +HVK D+VT+GI++D     FDGTG    WK+IGFL K VE+ TDPLV A +GKG FLR CEEV + SL     E K WTYQ L++LV+K
Sbjct:  323 FSRLDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEARVPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDGTGVFMTWKKIGFLDKPVEMKTDPLVHAAFGKGQFLRSCEEVKNQSLGTRDGESKSWTYQYLMELVVK 495
The following BLAST results are available for this feature:
BLAST of CX047610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP310_ARATH5.102e-5060.12Pentatricopeptide repeat-containing protein At4g14... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_15C06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15C06-F12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047610 ID=CX047610; Name=CX047610; organism=Citrus sinensis; type=EST; length=792bp
TTTTTTTTTTTTTTTTTAAAAAACTGAAATGTAAATAACTCATTAGCAAG
AACAATGAAGTACAAAATCAGGACTTGTCAAGTACTGATTTGAAAATTTC
CATCAGCAGCTCCTCTCACTTCATCCAAAAATTAATATGGCCATCTTGGT
ACAGTTGCGAATAACACAGATTGGCTGAATCATGAGAGGTCCTGTCAAGC
ATTCTATCTAAAACGTACCATCTAGATTCTGTACAGTCCTTGTAATCTAA
AACGTACCATCTAAATTCTTTCCATTGGGCTTTATCACTAAATCAATGAG
GTTCTGATATGTCCACCTCTTCTTTTCTCTAGAATATGGCTCAAGGGAGG
AATACACCTCTTCACAATATCGAAGGAAGTGCCCCTTGCCATATACTGCA
AGAACTAAAGGATCAGTGTTTATCTCTACAGTTTTGAAAAGGAAGCCTAT
CCTTTTCCACATTTCTAGAGCCCCAGTTCCATCAAAGCCAATTCTTCTTG
CATCATATAGGATTCCAATGGTGACTATATCTGGTTTCACATGTCGAGTA
GGCAGTTCAGAAAGTAAAACTCTCAAGTGCTTGAAATCTTTCATTTTCAA
ATAAGCTAGCAAAATAATGTTTGCAGTTGTTACATTCCATCGAACCTTTG
CGCTTTCCATCTCCCTAACAACAGAATCAATGCCTCTGTGACTCAAAAGA
CATGCATGAGAAAGGAGGCGTAAACACCAAACAAGCTCCGTCCTACCAAT
TCTTGAAGCAAGATCATCACCCAAGTCATCTAGTCTTGAAAA
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