CX047601

Overview
NameCX047601
Unique NameCX047601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047601 vs. ExPASy Swiss-Prot
Match: ISOA2_ARATH (Isoamylase 2, chloroplastic OS=Arabidopsis thaliana GN=ISA2 PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 8.368e-62
Identity = 127/284 (44.72%), Postives = 177/284 (62.32%), Query Frame = 3
Query:    3 SVDETQPVFTPTTEVDELQKVSTYLFRTDLGGLVSVSVGKKNVNYAVTIDVSSLQTTRGGH-KLVLIWGVYTSDSSSYMHLGSQCFTPDAKTGSIETPFTQTSFDTFALELGFEAKQTPFYLSFLLKSPL-RDGSGDFEIRNHLSAKFCVPVGLNAGVPSPMGLSFSTDG-SLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAKIIVNSIPNHHDLGLPPKYLGRLCKDPDF 845
            S++  + + +   E D+L+KV++Y FRT  G LV V V KK   Y++ + VSSL+ +     +LV++WGVY SDSS ++ L  +  + D++T + ET F ++S     L L F+ K++PFYLSF LK    RD  G  E+  H    FC+PVG  AG P P+GLS   D  S NF+ FSR +  VVLCLYDD+T D+PALELDLDPY+NR+GD+WHAS+++TW+FV YGYR K +    +      E ++LDPYA ++  S+          KYLG L K P F
Sbjct:   75 SIELREALSSRRAEADDLKKVTSYSFRTKAGALVKVKVEKKREKYSILVYVSSLELSGDDKSRLVMVWGVYRSDSSCFLPLDFENSSQDSQTHTTETTFVKSSLSELMLGLEFDGKESPFYLSFHLKLVSGRDPDGQ-EMLTHRDTDFCIPVGFTAGHPLPLGLSSGPDDDSWNFSFFSRSSTNVVLCLYDDSTTDKPALELDLDPYVNRTGDVWHASVDNTWDFVRYGYRCKETAHSKEDVDVEGEPIVLDPYATVVGKSVSQ--------KYLGSLSKSPSF 349          
BLAST of CX047601 vs. ExPASy Swiss-Prot
Match: ISOA1_ARATH (Isoamylase 1, chloroplastic OS=Arabidopsis thaliana GN=ISA1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.876e-15
Identity = 39/108 (36.11%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  456 LNAGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLYD--DTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAKIIVN 773
            ++ G+PSP G +   DG +NF+++S ++    +CL    D   ++   E+ LDP  NR+G +WH  +   +  + YGYRF G FS  +G+     ++LLDPYAK I++
Sbjct:   69 ISDGLPSPFGPTVRDDG-VNFSVYSTNSVSATICLISLSDLRQNKVTEEIQLDPSRNRTGHVWHVFLRGDFKDMLYGYRFDGKFSPEEGHYYDSSNILLDPYAKAIIS 175          
BLAST of CX047601 vs. ExPASy Swiss-Prot
Match: ISOA3_ARATH (Isoamylase 3, chloroplastic OS=Arabidopsis thaliana GN=ISA3 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.809e-14
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 3
Query:  456 LNAGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLY-----DDTTADRPALELDLDPYINRSGDIWHASMES-TWNFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAKII 767
            +++G  SP+G+S   D  +NFA+FS++A  V LCL       D T D   +EL LDP +N++GD WH  +E    N V YGYR  G      G++     +LLDPYAK++
Sbjct:   85 VSSGEVSPLGVS-QVDKGINFALFSQNATSVTLCLSLSQSGKDDTDDDGMIELVLDPSVNKTGDTWHICVEDLPLNNVLYGYRVDGPGEWQQGHRFDRSILLLDPYAKLV 193          
BLAST of CX047601 vs. ExPASy Swiss-Prot
Match: GLGX_YERE8 (Glycogen debranching enzyme OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=glgX PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.500e-13
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  456 LNAGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAKII 767
            L +G P+PMG  F   G +NF +FS HA+ V LCL+DD        EL + P   RSGDIWH  +        YGYR  G F+   G++ +   +L+DPYA+ +
Sbjct:    4 LTSGSPTPMGAHFDGVG-INFTLFSAHAEQVELCLFDDNNQ-----ELRI-PLPARSGDIWHGYLPGGKPGQRYGYRVSGPFNPQQGHRFNPHKLLIDPYARAL 100          
BLAST of CX047601 vs. ExPASy Swiss-Prot
Match: GLGX_KLEP3 (Glycogen debranching enzyme OS=Klebsiella pneumoniae (strain 342) GN=glgX PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 3
Query:  456 LNAGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAKIIVNSIPNHHDL 797
            L AG P+P+G S+   G +NFA+FS HA+ V LC++D+   ++    +DL     RSGDIWH  +++    + YGYR  G +    G++ +   +LLDP A  +   +P+   L
Sbjct:    4 LAAGKPAPLGASYDGKG-VNFALFSAHAERVELCVFDEQGNEQ---RVDLPA---RSGDIWHGWLDAAGPGLRYGYRVHGPWDPAQGHRFNPAKLLLDPCAYRVEGDLPDDERL 110          
BLAST of CX047601 vs. ExPASy Swiss-Prot
Match: GLGX_KLEP7 (Glycogen debranching enzyme OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=glgX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  456 LNAGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAKIIVNSIPNHHDL 797
            L AG P+P+G S+   G +NFA+FS HA+ V LC++D+   ++     DL     RSGDIWH  + +    + YGYR  G +    G++ +   +L+DP A  +   +P+   L
Sbjct:    4 LAAGKPAPLGASYDGKG-VNFALFSAHAERVELCVFDEQGNEQ---RFDLPA---RSGDIWHGWLAAAGPGLRYGYRVHGPWDPAQGHRFNPAKLLIDPSAHRVEGDLPDDERL 110          
BLAST of CX047601 vs. ExPASy Swiss-Prot
Match: GLGX_PECCP (Glycogen debranching enzyme OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=glgX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  456 LNAGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAK 761
            L  G P+P+G SF   G +NFA+FS  A+ V LC++D+   ++  LEL       RSGDIWH  + +    + YG+R  G F    G + +   +LLDP A+
Sbjct:    4 LQTGKPTPLGASFDGQG-VNFALFSADAERVELCIFDERQQEQ-RLELTA-----RSGDIWHGYLPAAQPGLRYGFRVDGPFEPSQGLRFNPHKLLLDPCAR 98          
BLAST of CX047601 vs. ExPASy Swiss-Prot
Match: GLGX_SERP5 (Glycogen debranching enzyme OS=Serratia proteamaculans (strain 568) GN=glgX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.148e-11
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 3
Query:  456 LNAGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAKII 767
            L  G+ +P+G  +  +G +NF+++S HA GV LCL+D+        E+ L P   RSGDIWH  +        YGYR  G F    G + +   +LLDP A+ +
Sbjct:    4 LTPGIAAPLGAYYDGNG-INFSLYSAHATGVELCLFDEQQR-----EVRL-PLATRSGDIWHGYLPGGKPGQRYGYRVHGPFDPAQGLRFNPNKLLLDPAARAV 100          
The following BLAST results are available for this feature:
BLAST of CX047601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ISOA2_ARATH8.368e-6244.72Isoamylase 2, chloroplastic OS=Arabidopsis thalian... [more]
ISOA1_ARATH5.876e-1536.11Isoamylase 1, chloroplastic OS=Arabidopsis thalian... [more]
ISOA3_ARATH3.809e-1440.91Isoamylase 3, chloroplastic OS=Arabidopsis thalian... [more]
GLGX_YERE85.500e-1340.38Glycogen debranching enzyme OS=Yersinia enterocoli... [more]
GLGX_KLEP31.600e-1235.96Glycogen debranching enzyme OS=Klebsiella pneumoni... [more]
GLGX_KLEP76.081e-1235.09Glycogen debranching enzyme OS=Klebsiella pneumoni... [more]
GLGX_PECCP3.018e-1138.24Glycogen debranching enzyme OS=Pectobacterium caro... [more]
GLGX_SERP55.148e-1136.54Glycogen debranching enzyme OS=Serratia proteamacu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_15B11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15B11-D22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047601 ID=CX047601; Name=CX047601; organism=Citrus sinensis; type=EST; length=847bp
TTTCTGTTGACGAAACTCAGCCCGTCTTTACTCCGACTACTGAAGTTGAT
GAGCTTCAGAAGGTGTCCACTTATCTATTTAGGACTGACCTCGGCGGTCT
GGTGAGTGTTTCTGTTGGCAAGAAAAATGTTAATTATGCAGTCACTATTG
ATGTTTCTTCATTGCAAACAACTCGAGGTGGCCACAAGTTGGTGCTCATC
TGGGGTGTCTACACTTCTGACTCGTCGTCTTATATGCATCTGGGCTCTCA
ATGTTTTACTCCAGATGCCAAAACCGGGAGCATTGAAACCCCATTTACAC
AGACTTCTTTTGATACTTTTGCCCTTGAATTGGGGTTTGAGGCAAAACAA
ACTCCCTTTTATCTCTCTTTCTTGTTGAAATCTCCTTTACGTGATGGTTC
GGGTGATTTTGAAATCAGGAATCATCTGAGTGCAAAGTTTTGTGTGCCAG
TTGGTTTGAATGCCGGTGTACCATCTCCTATGGGTCTCTCCTTCTCCACT
GATGGTTCCTTGAATTTTGCTATCTTTTCAAGACATGCACAAGGCGTGGT
TCTATGCTTGTACGACGACACTACAGCAGATAGACCTGCTTTAGAGCTTG
ATCTTGATCCTTATATCAATCGATCTGGAGACATCTGGCATGCCTCGATG
GAAAGTACCTGGAACTTTGTCAGCTATGGCTATCGGTTCAAGGGAAGCTT
CAGTCAGGGAGATGGGTATAAGTCTCATCTGGAAAGTGTTCTTCTGGATC
CATATGCTAAAATTATTGTGAATTCTATTCCTAACCATCACGACTTGGGC
TTGCCACCAAAGTATCTTGGACGATTATGCAAGGACCCTGATTTTGA
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