CX047586

Overview
NameCX047586
Unique NameCX047586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047586 vs. ExPASy Swiss-Prot
Match: PLZ12_LUPPO (Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 8.343e-84
Identity = 157/185 (84.86%), Postives = 171/185 (92.43%), Query Frame = -1 
Query:  152 MTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQVDG*VIFTRYC 706
            M LD+LFEQKGEVAK+VLEELEKVMG YGY+IEHILMVDIIPD +VR+AMNEINAAQR+QLAS+YKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEG SAKEVMDLIMITQYFDTIKDLGNSS NTTVF+PHGPGHVRDI +QIRNGLME++ A ++      R+C
Sbjct:    1 MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQLASLYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTSAKEVMDLIMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGEQIRNGLMESARAGIN----IERFC 181
[Close]
BLAST of CX047586 vs. ExPASy Swiss-Prot
Match: Y1128_SYNY3 (Uncharacterized protein slr1128 OS=Synechocystis sp. (strain PCC 6803) GN=slr1128 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 48/213 (22.54%), Postives = 103/213 (48.36%), Query Frame = -1 
Query:  260 TKDNVFVQLLCSIQYRMFRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRE---NILNFSHKVEGAS-----------AKEVMDLIMITQYFDTIKDLGNSSNNTTVFL 856
            TKDNV +     + +R+   + + A+Y+++N +  +   V   +R+ + ++ LD+ F  + E+ + +L EL+     +G  +  + + DI+P  AV  +M     A+R + A++   E ++   +  A+ +A+A+ L     A+++ AI +   E    +L      E  S           A+E +  ++  QY +    +G+S ++  +FL
Sbjct:   75 TKDNVAITADAVVYWRII--DMEKAYYKVENLQSAMVNLVLTQIRSEIGKLELDQTFTARTEINELLLRELDISTDPWGVKVTRVELRDIMPSKAVLDSMELQMTAERKKRAAILTSEGQRDSAINSAQGDAQARVL--EAEAKKKAAILNAEAEQQKKVLEAKATAEALSILTEKLSSDNHAREALQFLLAQQYLNMGTTIGSSDSSKVMFL 283
The following BLAST results are available for this feature:
BLAST of CX047586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PLZ12_LUPPO8.343e-8484.86Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE... [more]
Y1128_SYNY39.419e-1122.54Uncharacterized protein slr1128 OS=Synechocystis s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_15B01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15B01-D2-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047586 ID=CX047586; Name=CX047586; organism=Citrus sinensis; type=EST; length=880bp
ATAAAAACATTATAATCCTGTTTATTCGTAGCTCTTGGCAGCAGGGAAAA
ACAACTATACATCGAAGTATGAATACCATCCTATATTATTAGCATCTCTG
TAAATTCAATGTAGCTTAAGCAATCATATGCTGTAGAAAGAACTAGTATT
GACAATAGCGGGTAAAAATCACTCAACCATCTACTTGAGCAGCAGATGCC
TCCATCAGCCCGTTGCGTATCTGATCGCTGATATCCCGAACATGACCAGG
ACCATGGGGTAGAAAGACAGTTGTGTTATTTGATGAGTTCCCAAGGTCCT
TGATCGTGTCAAAGTACTGAGTGATCATGATGAGATCCATAACCTCCTTA
GCTGAGGCGCCTTCTACCTTATGAGAGAAGTTCAAAATGTTCTCTCGCAA
ACCATCTGTTATTGCCTGCCGTTGCCTGGCCACACCTACGCCACCAAGGT
ACTTGGCTTCAGCTTCAGCTTCTGCTCTTTTAACTTGGAGAATCTTCTCA
GCTTCCCCTTTGTATACACTAGCAAGCTGAAGCCTTTGAGCCGCATTGAT
CTCATTCATTGCCTTGCGCACAGCAGGATCAGGTATAATGTCTACCATCA
ATATGTGCTCAATGCTATATCCATATGCACCCATCACCTTCTCAAGTTCC
TCCAAAACAGCTTTAGCAACTTCGCCTTTTTGTTCAAAGAGCTCATCCAA
TGTCATTCTTGGAACAAGAGCACGAACCACATCAAACACATAAGCCTGGA
TCTGCTCTTTGGGGTTCTGCAACTCATAAAATGCATCATCAGCATTTGCT
CTGAACATCCGGTACTGAATTGAACACAGCAGTTGCACAAAGACATTGTC
CTTGGTTTTGGTCTCGATACGGACATCGAG
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