CX047579

Overview
NameCX047579
Unique NameCX047579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047579 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.794e-87
Identity = 158/219 (72.15%), Postives = 182/219 (83.11%), Query Frame = 1
Query:  139 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFC-QSLYGGLDRVART 792
            R+VWA NLESEF+LI  +++ YPFISMDTEFPG++Y+ D+D       R+  P+  Y +LKSNVDAL+LIQVGLTLSD+ GNLPDLG   N ++IWEFNFRDFD+  D HAPDSIELLR  GIDFERNR+EGV+S RFAELMMSSGL+CNESVSWVTFHSAYDFGYLVKILTRR LP  L EFL +LR FFG+ +YDVKHIMRFC Q LYGGLDRVAR+
Sbjct:   15 RDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLD-----VLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARS 228          
BLAST of CX047579 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 9.842e-86
Identity = 156/219 (71.23%), Postives = 180/219 (82.19%), Query Frame = 1
Query:  139 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQ-SLYGGLDRVART 792
            REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+        R   P D Y +LK+NVDAL+LIQVGLTLSD +GNLPDLG   +  FIWEFNFRDFD+A DAHAPDSIELLR QGIDFERN ++GV+S RFAELMMSSGLVCNE VSWVTFHSAYDFGYL+KILTRR LP  L EF  ++RV FG  +YDVKH+M+FC+  L+GGLDRVART
Sbjct:   20 REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVART 230          
BLAST of CX047579 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 3.406e-62
Identity = 118/217 (54.38%), Postives = 159/217 (73.27%), Query Frame = 1
Query:  139 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 786
            REVW  NLESE  LI +V+D +PF++MDTEFPG+V RP     T   +       HY+ LK+NV+ L +IQ+GLT SD  GNLP  G+  +NK+ IW+FNFR+FD+ +D +A DSIELLR  GIDF +N + G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP     F  ++ V+F   +YD+KH+M+FC SL+GGL+++A
Sbjct:   13 REVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY-------HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLA 219          
BLAST of CX047579 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.604e-59
Identity = 111/217 (51.15%), Postives = 154/217 (70.97%), Query Frame = 1
Query:  139 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 786
            REVW  NL+ E +LI  V+D +P+++MDTEFPG+V RP     S   Y        HY+ LK+NV+ L +IQ+GLT S+  GNLP  G+  +   IW+FNFR+FD+ +D  A DSIELL+  GID  +N  +G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP    +F  ++ V+F   +YD+KH+M+FC SL+GGL+++A
Sbjct:   13 REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY--------HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLA 218          
BLAST of CX047579 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.013e-59
Identity = 116/217 (53.46%), Postives = 156/217 (71.89%), Query Frame = 1
Query:  139 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 786
            REVW  NL  EF LI +++D++ +I+MDTEFPG+V +P    +T  Y        +Y+ LK NVD L LIQVGLT SD +GNLP  G+   +KF IW+FNFR+F+I  D +A +SIELLR  GIDF++N ++G+D VRF ELMMSSG+V N+++SWVTFH  YDFGYLVK+LT + LP    +F  +L V+F   +YD+KH+M FC  L+GGL+R+A
Sbjct:   13 REVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKYNNDL----NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLA 218          
BLAST of CX047579 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.793e-56
Identity = 109/217 (50.23%), Postives = 151/217 (69.59%), Query Frame = 1
Query:  139 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 786
            REVW  NLE E  LI Q ID +P+++MDTEFPG+V +    +P+  PY    + +  Y  LK+NV+ L LIQ+GLTLSD  GNLP  G+  N + IW+FNFR+F++ +D  A DSIELLR   ID E+N + GVD+ RFAEL+M SG+V N+ + WVTFH  YDFGYL+K+L+ + LP  + +F   +  FF   +YD+K++M FC +LYGGL+++A
Sbjct:   17 REVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN--YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFF-PVVYDIKYLMGFCTNLYGGLEKIA 228          
BLAST of CX047579 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.042e-47
Identity = 99/217 (45.62%), Postives = 142/217 (65.44%), Query Frame = 1
Query:  139 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 786
            R+VW++NL+ E  LI  +I+RYP +SMDTEFPG+V RP  V  S+  Y        HY+ L++NVD+L +IQ+GL LSD  GN P           W+FNF  F++  D +AP+SIELL   GIDF+++++ G++   FAEL++ SGLV  E V+W+TFHS YDF YL+K +T+  LP+  +EF  IL ++F  N YD+K+IM+   +   GL  +A
Sbjct:   23 RDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY--------HYQTLRANVDSLKIIQIGLALSDEEGNAPV------EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKN-YDIKYIMKSVLNNSKGLQDIA 223          
BLAST of CX047579 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.536e-46
Identity = 101/216 (46.76%), Postives = 142/216 (65.74%), Query Frame = 1
Query:  142 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 786
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  ILR+FF   IYDVK++M+ C++L GGL  VA
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVA 213          
BLAST of CX047579 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 1.536e-46
Identity = 101/216 (46.76%), Postives = 142/216 (65.74%), Query Frame = 1
Query:  142 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 786
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  ILR+FF   IYDVK++M+ C++L GGL  VA
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVA 213          
BLAST of CX047579 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.536e-46
Identity = 101/216 (46.76%), Postives = 142/216 (65.74%), Query Frame = 1
Query:  142 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 786
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  ILR+FF   IYDVK++M+ C++L GGL  VA
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVA 213          
The following BLAST results are available for this feature:
BLAST of CX047579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1K_ARATH1.794e-8772.15Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1I_ARATH9.842e-8671.23Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1G_ARATH3.406e-6254.38Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1F_ARATH4.604e-5951.15Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1J_ARATH6.013e-5953.46Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1B_ARATH2.793e-5650.23Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CAF1_SCHPO4.042e-4745.62Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT7_MOUSE1.536e-4646.76CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]
CNOT7_HUMAN1.536e-4646.76CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
CNOT7_CHICK1.536e-4646.76CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15A05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15A05-B10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047579 ID=CX047579; Name=CX047579; organism=Citrus sinensis; type=EST; length=792bp
AGGACTTTCAAATCTCACCCACGAAGCGTCGAGCTGCAAGCTATTAGCTG
ACCATCATCACTCATCATGGGAGTTGAAGATTTTTCTACGGATTTAGATT
CAAATTCAAATTCCAGCTCATCGAATTCGATTATAATACGCGAAGTCTGG
GCGTCTAATTTGGAATCCGAATTCGAACTCATCAGCCAAGTCATCGATCG
GTACCCTTTTATTTCCATGGACACCGAATTCCCCGGTCTTGTCTACCGAC
CCGATGTGGACCCCTCCACCAGGCCTTACTTCCGTCAACGCAAGCCGTCC
GATCACTACAAGGTTCTGAAATCCAACGTCGACGCCTTGAACTTGATCCA
GGTGGGCCTCACTCTCTCTGACTCTTCCGGTAACTTGCCGGATTTGGGCT
CCGGGGGCAACAATAAATTCATCTGGGAGTTCAACTTCCGGGACTTCGAT
ATCGCGACGGACGCCCACGCGCCGGATTCGATAGAGCTGCTGAGACTGCA
GGGGATTGACTTTGAGCGCAACAGGAAGGAAGGCGTTGACTCGGTTCGGT
TCGCCGAGTTGATGATGTCGTCGGGACTCGTCTGTAACGAATCGGTGAGT
TGGGTCACGTTCCACAGCGCGTACGATTTCGGGTACCTGGTTAAGATCCT
CACGCGCCGGAGCTTGCCCAGTGGCCTAGACGAGTTCTTGACGATCCTCA
GGGTGTTTTTCGGTAACAATATTTATGACGTCAAACACATTATGCGGTTC
TGTCAGAGCTTGTACGGTGGTTTGGACCGAGTGGCTCGGACG
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