CX047575

Overview
NameCX047575
Unique NameCX047575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047575 vs. ExPASy Swiss-Prot
Match: GATA1_ARATH (GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.016e-27
Identity = 51/66 (77.27%), Postives = 60/66 (90.91%), Query Frame = 3
Query:  384 GRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMR 581
            GR+C HC +++TPQWRAGP GPKTLCNACGVRYKSGRL+PEYRPA SPTF + LHSNSH+K++EMR
Sbjct:  193 GRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMR 258          
BLAST of CX047575 vs. ExPASy Swiss-Prot
Match: GATA4_ARATH (GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.633e-27
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 3
Query:  387 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMR 581
            RRC+HC S++TPQWR GPLGPKTLCNACGVRYKSGRL+PEYRPA SPTFV   HSNSH+KV+E+R
Sbjct:  158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELR 222          
BLAST of CX047575 vs. ExPASy Swiss-Prot
Match: GAT11_ARATH (GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.438e-27
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 3
Query:  384 GRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMR 581
            GRRC HC +++TPQWR GP+GPKTLCNACGVRYKSGRL+PEYRPA SPTFV   HSNSH+KV+E+R
Sbjct:  196 GRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRKVMELR 261          
BLAST of CX047575 vs. ExPASy Swiss-Prot
Match: GATA2_ARATH (GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.660e-27
Identity = 51/65 (78.46%), Postives = 59/65 (90.77%), Query Frame = 3
Query:  387 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMR 581
            RRC+HC S++TPQWR GPLGPKTLCNACGVR+KSGRL+PEYRPA SPTFV   HSNSH+KV+E+R
Sbjct:  179 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELR 243          
BLAST of CX047575 vs. ExPASy Swiss-Prot
Match: GAT14_ARATH (GATA transcription factor 14 OS=Arabidopsis thaliana GN=At5g66320 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.229e-26
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 3
Query:  387 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMR 581
            R+CSHC  Q+TPQWRAGP+G KTLCNACGVRYKSGRLLPEYRPA SPTF S LHSN H+KV+EMR
Sbjct:  249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMR 313          
BLAST of CX047575 vs. ExPASy Swiss-Prot
Match: GAT13_ARATH (GATA transcription factor 13 OS=Arabidopsis thaliana GN=At5g25830 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.965e-26
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 3
Query:  387 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMR 581
            RRC HC + +TPQWR GP+GPKTLCNACGVRYKSGRL+PEYRPA SPTFV   HSNSH+KV+E+R
Sbjct:  219 RRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELR 283          
BLAST of CX047575 vs. ExPASy Swiss-Prot
Match: GATA9_ARATH (GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.469e-26
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 3
Query:  387 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMR 581
            R+C HC  Q+TPQWRAGPLG KTLCNACGVRYKSGRLLPEYRPA SPTF S LHSN H KV+EMR
Sbjct:  221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSKVIEMR 285          
BLAST of CX047575 vs. ExPASy Swiss-Prot
Match: GAT10_ARATH (GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.445e-25
Identity = 51/65 (78.46%), Postives = 54/65 (83.08%), Query Frame = 3
Query:  387 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMR 581
            R+C HC   +TPQWR GP+GPKTLCNACGVRYKSGRL PEYRPA SPTF   LHSNSHKKV EMR
Sbjct:  229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKKVAEMR 293          
BLAST of CX047575 vs. ExPASy Swiss-Prot
Match: GAT12_ARATH (GATA transcription factor 12 OS=Arabidopsis thaliana GN=At4g36240 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 3
Query:  387 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRM 584
            R CSHC  Q+TPQWR GPLG KTLCNACGVR+KSGRLLPEYRPA SPTF + +HSNSH+KVLE+R+
Sbjct:  164 RCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEIHSNSHRKVLELRL 229          
BLAST of CX047575 vs. ExPASy Swiss-Prot
Match: GATA6_ARATH (GATA transcription factor 6 OS=Arabidopsis thaliana GN=GATA6 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.490e-25
Identity = 46/65 (70.77%), Postives = 58/65 (89.23%), Query Frame = 3
Query:  387 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMR 581
            R+C+HC + +TPQWR GP GPKTLCNACGVR++SGRL+PEYRPA SPTF+  +HSNSH+K++EMR
Sbjct:  220 RKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRKIIEMR 284          
The following BLAST results are available for this feature:
BLAST of CX047575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GATA1_ARATH2.016e-2777.27GATA transcription factor 1 OS=Arabidopsis thalian... [more]
GATA4_ARATH2.633e-2780.00GATA transcription factor 4 OS=Arabidopsis thalian... [more]
GAT11_ARATH3.438e-2777.27GATA transcription factor 11 OS=Arabidopsis thalia... [more]
GATA2_ARATH7.660e-2778.46GATA transcription factor 2 OS=Arabidopsis thalian... [more]
GAT14_ARATH2.229e-2681.54GATA transcription factor 14 OS=Arabidopsis thalia... [more]
GAT13_ARATH4.965e-2676.92GATA transcription factor 13 OS=Arabidopsis thalia... [more]
GATA9_ARATH8.469e-2681.54GATA transcription factor 9 OS=Arabidopsis thalian... [more]
GAT10_ARATH1.445e-2578.46GATA transcription factor 10 OS=Arabidopsis thalia... [more]
GAT12_ARATH2.464e-2577.27GATA transcription factor 12 OS=Arabidopsis thalia... [more]
GATA6_ARATH5.490e-2570.77GATA transcription factor 6 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15A03-B6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047575 ID=CX047575; Name=CX047575; organism=Citrus sinensis; type=EST; length=780bp
CTTCCCTGGAAAAATTTGTTGTTCCGGGCAAGGCAAGAAGCAAAAGAAAG
AGAGCCTCAAGCACTGCTAAATTAACTCAAACAAGCACGTCATTATCATC
GTTAACAACTGGTTGTTGGACGACCACTCATAACAACCACCCGGCAGATA
CCCAACTCTTTCACTCCGACGACCCTCCTCTGCTTCAAGTTCAACAGGCC
TTCTGGCTTGCTGATAGTCAACTCATTTTCCCCAAAAAAGAAACCACCAA
CACCAACGCTATCAACACCAACAGCAACAAGAAAGCGAAAGCTAATGATG
GTGATGAGGAGGAGGAGGCAAAAGAAGAAGAAACAGAAATTGGCAAGGAA
GTTGAAGTTGTCCAGCAGCAGCAGCAGCAGCAAGGAAGGAGGTGCAGTCA
TTGTCTATCACAAAGGACGCCACAGTGGAGGGCGGGACCATTGGGTCCAA
AGACTCTGTGTAATGCATGTGGGGTGAGGTACAAGTCTGGGAGGTTACTG
CCTGAGTATAGGCCGGCCAAGAGCCCTACTTTTGTTAGCTACTTGCACTC
CAATTCTCACAAGAAAGTCTTGGAGATGAGAATGGCTCTGATGCCTTCTC
CTTCTTCACTTCCCAAGTAATTATTATTAGACAGACAACAAAAGAGAAAA
TATATAATGCAGAAATCTTTTAATAGTTAGTGTTGCTCTACTCTAGCAGG
TAGTAGCTAGTAGTAACTTTCTTTTAATTTAATTTTTATGGGTATTATTA
ATCAATCAATTAATTAAGGTTTTAAAAAAA
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