CX047565

Overview
NameCX047565
Unique NameCX047565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047565 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 350.903 bits (899), Expect = 4.520e-96
Identity = 178/228 (78.07%), Postives = 186/228 (81.58%), Query Frame = -1
Query:   93 KDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 776
            +DY HEVA+I+SNASCTTNCLAPF KV+DEE GIVKG +TTTHSYTGDQ                 LNIVPTSTGAAKAVSLVLPQLKGKLNGIALR              V KKGI+AEDVNAAFRKAAEGPLKGIL VCDVPLVSVDFRCSDVS+TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA KWPG    GSGDPLEDFC+TNPADEECKVYE
Sbjct:  224 QDYGHEVADIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKWPGTPKVGSGDPLEDFCETNPADEECKVYE 451          
BLAST of CX047565 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 349.362 bits (895), Expect = 1.315e-95
Identity = 175/228 (76.75%), Postives = 186/228 (81.58%), Query Frame = -1
Query:   93 KDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 776
            +DY H+VANI+SNASCTTNCLAPF KV+DEE GIVKG +TTTHSYTGDQ                 LNIVPTSTGAAKAVSLVLPQLKGKLNGIALR              VEKKG+TAEDVN AFRKAA GP+KGIL VCD PLVSVDFRCSDVS+TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA+KWPG  A GSGDPLEDFC+TNPADEECKVY+
Sbjct:  220 QDYGHDVANIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGAEAVGSGDPLEDFCKTNPADEECKVYD 447          
BLAST of CX047565 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.505e-91
Identity = 171/229 (74.67%), Postives = 182/229 (79.48%), Query Frame = -1
Query:   93 KDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAG-GSGDPLEDFCQTNPADEECKVYE 776
            KDY H+VANI+SNASCTTNCLAPFVKV+DEELGIVKG +TTTHSYTGDQ                 LNIVPTSTGAAKAVSLVLPQLKGKLNGIALR              +EK G+TAEDVN AFRKAA GPLKG+L VCD+PLVSVDFRCSD SSTIDSSLTMVMG DMVKVVAWYDNEWGYSQRVVDLA LVA KWPG+     SGDPLEDFC+ NPADEECK+YE
Sbjct:  223 KDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKWPGLEGSVASGDPLEDFCKDNPADEECKLYE 451          
BLAST of CX047565 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 7.077e-85
Identity = 158/201 (78.61%), Postives = 164/201 (81.59%), Query Frame = -1
Query:  174 KDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPG 776
            +DY HEVA+I+SNASCTTNCLAPFVKVMDEELGIVKG +TTTHSYTGDQ                 LNIVPTSTGAAKAVSLVLPQLKGKLNGIALR              V KKGITAEDVNAAFRKAA+GPLKG+LAVCD PLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA  WPG
Sbjct:  193 QDYSHEVADIISNASCTTNCLAPFVKVMDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNWPG 393          

HSP 2 Score: 29.261 bits (64), Expect = 7.077e-85
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = -2
Query:   83 THWRISARQTLLMRSAKFMKLKF 151
            +HW   ARQ LLMR+AK M  +F
Sbjct:  402 SHWMSFARQILLMRNAKSMNNRF 424          
BLAST of CX047565 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.584e-67
Identity = 137/197 (69.54%), Postives = 147/197 (74.62%), Query Frame = -1
Query:  180 YDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 770
            Y HE   I+SNASCTTNCLAPFVKV+D++ GI+KG +TTTHSYTGDQ                 LNIVPTSTGAAKAV+LVLP LKGKLNGIALR              V KK   AE+VNAAFR AAE  LKGIL VCD PLVSVDFRCSDVSSTIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:   38 YSHE-DTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 232          
BLAST of CX047565 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 7.519e-67
Identity = 131/190 (68.95%), Postives = 147/190 (77.37%), Query Frame = -1
Query:  180 IVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 749
            I+SNASCTTNCLAPFVKV+D++ GI+KG +TTTHSYTGDQ                 LNIVPTSTGAAKAV+LVLP LKGKLNGIALR              V KK   AE+VNAAFR++A+  LKGIL+VCD PLVS+DFRC+DVSSTIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA KW
Sbjct:  212 IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKW 400          
BLAST of CX047565 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 249.595 bits (636), Expect = 1.418e-65
Identity = 133/197 (67.51%), Postives = 146/197 (74.11%), Query Frame = -1
Query:  180 YDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 770
            Y H+   I+SNASCTTNCLAPFVKV+D++ GI+KG +TTTHSYTGDQ                 LNIVPTSTGAAKAV+LVLP LKGKLNGIALR              V KK   AE+VNAAFR +AE  LKGIL VCD PLVSVDFRCSD S+TIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:  201 YSHDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 395          
BLAST of CX047565 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.852e-65
Identity = 131/198 (66.16%), Postives = 149/198 (75.25%), Query Frame = -1
Query:  180 DYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 773
            DY HE   I+SNASCTTNCLAPFVKV++++ GIVKG +TTTHSYTGDQ                 LNIVPT+TGAAKAVSLVLP LKGKLNGIALR              VEKK   AE+VNAAFR+AA GP+KG+L V D PLVS+DF+C+D S++ID+SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLA + A KW
Sbjct:  177 DYKHEYP-IISNASCTTNCLAPFVKVLEQKFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTTTGAAKAVSLVLPSLKGKLNGIALRVPTPTVSVVDLVVQVEKKTF-AEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAEVTAKKW 372          
BLAST of CX047565 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.126e-65
Identity = 130/190 (68.42%), Postives = 143/190 (75.26%), Query Frame = -1
Query:  180 IVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 749
            I+SNASCTTNCLAPFVKV+D++ GI+KG +TTTHSYTGDQ                 LNIVPTSTGAAKAVSLVLP LKGKLNGIALR              V KK + AE+VN AFR AA   L GIL VCDVPLVSVDFRCSDVSSTID+SLTMVMGDDMVKV++WYDNEWGYSQRVVDLA + A +W
Sbjct:  214 IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTL-AEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQW 402          
BLAST of CX047565 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 4.562e-64
Identity = 127/191 (66.49%), Postives = 144/191 (75.39%), Query Frame = -1
Query:  180 NIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 752
            +I+SNASCTTNCLAPFVKV+D++ GI+KG +TTTHSYTGDQ                 LNIVPTSTGAAKAV+LVLP LKGKLNGIALR              V KK   AE+VN AFR++A   L GIL+VCD PLVSVDFRC+DVSST+DSSLTMVMGDD+VKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:  215 DIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNW 404          
The following BLAST results are available for this feature:
BLAST of CX047565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
G3PB_PEA4.520e-9678.07Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH1.315e-9576.75Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL1.505e-9174.67Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC7.077e-8578.61Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_SINAL2.584e-6769.54Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SPIOL7.519e-6768.95Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH1.418e-6567.51Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHLRE1.852e-6566.16Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE4.126e-6568.42Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA4.562e-6466.49Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14H07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H07-P13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047565 ID=CX047565; Name=CX047565; organism=Citrus sinensis; type=EST; length=776bp
CTCAGTTGTCATTAATATAAAAGCATTTTGTGACAAAGGCTGCGAAAAAC
CTATGTAATTAATTAGCCAACCAATTAAGAAAGAATTTAAGCTTCATAAA
CTTTGCACTCCTCATCAGCAGGGTTTGTCTGGCAGAAATCCTCCAATGGG
TCTCCGCTTCCGCCTGCAGCCACGCCTGGCCACTTGGTTGCAACCAAATG
CGCCAAATCGACAACCCTTTGGCTGTATCCCCATTCATTGTCGTACCAGG
CAACAACCTTGACCATATCATCACCCATGACCATGGTCAATGAAGAGTCA
ATGGTGGAGGAAACATCAGAGCATCGGAAGTCCACCGACACCAGTGGAAC
ATCGCAGACGGCCAATATGCCCTTCAGTGGCCCCTCAGCAGCCTTTCTGA
AGGCTGCATTAACATCTTCTGCTGTAATACCCTTTTTCTCAACGTTCACA
ACAAGGTCAACGACTGAAACATTTGGTGTTGGCACACGGAGCGCAATGCC
GTTGAGCTTGCCTTTGAGCTGTGGCAGCACAAGAGAAACAGCCTTGGCGG
CACCTGTGCTCGTTGGGACAATGTTCAACGCTGCAGCTCTCGCTCTCCTC
AAGTCCCTGTGTGAAGCATCCAAGAGCCTCTGGTCTCCAGTGTAGGAGTG
AGTAGTTGTAATCGCTCCCTTGACAATCCCCAATTCTTCATCCATGACCT
TCACAAAAGGAGCCAAACAGTTTGTGGTGCAAGAAGCATTGCTCACAATG
TTTGCAACCTCGTGATCGTAATCCTT
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