CX047560

Overview
NameCX047560
Unique NameCX047560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047560 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 2.640e-80
Identity = 136/180 (75.56%), Postives = 153/180 (85.00%), Query Frame = -2
Query:  368 NQGFMSHISVGKGTPMRPGPIDAYLFSLIDEDAKSVDPGNFERHWGIFTYDGRPKYQINLGTTNSGSLVPARSVHYLQKKWCVMKPSARLDDPQVAPSVSYACGLADCTSLGYGTSCGNLDARGNISYAFNSYYQKNNQLDTACKFPNLSMITKADPSVGSCIFQITMEPYYGGAERRIG 907
            NQGFM+HIS GKGTP RPGPIDAYLFSLIDEDAKSV PG FERHWGIFT+DG PKY +NLGTTN+G+L+ A+ V YL++KWCVMKP+ RLDDPQVAP+VSYAC L DCTSLG GTSC NLD + NISYAFNSYYQ  +QLDTACKFPN+S +TK DPS G+C F I +EPYYGGA R  G
Sbjct:  282 NQGFMAHISGGKGTPRRPGPIDAYLFSLIDEDAKSVQPGYFERHWGIFTFDGLPKYALNLGTTNTGALIQAKGVRYLERKWCVMKPNVRLDDPQVAPAVSYACSLGDCTSLGVGTSCANLDGKQNISYAFNSYYQIQDQLDTACKFPNISEVTKTDPSTGTCRFPIMIEPYYGGAAREHG 461          
BLAST of CX047560 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.170e-66
Identity = 114/169 (67.46%), Postives = 138/169 (81.66%), Query Frame = -2
Query:  401 NQGFMSHISVGKGTPMRPGPIDAYLFSLIDEDAKSVDPGNFERHWGIFTYDGRPKYQINLGTTNSGSLVPARSVHYLQKKWCVMKPSARLDDPQVAPSVSYACGLADCTSLGYGTSCGNLDARGNISYAFNSYYQKNNQLDTACKFPNLSMITKADPSVGSCIFQITME 907
            NQGFM+     KGTPMRPG +DAYLF LIDEDAKS+ PGNFERHWGIF  DG+PKYQ++LG+ N   L+PA+ VHYL KKWC++ P+A L DPQ+ PSVSYAC  ADCTSLGYG+SCGNL+   N+SYAFNSYYQ +NQLD+ACKFP LS+++  DPSVGSC F+I ++
Sbjct:  287 NQGFMNRQKANKGTPMRPGAMDAYLFGLIDEDAKSIQPGNFERHWGIFYIDGQPKYQLSLGSGNG--LIPAKDVHYLAKKWCILAPNANLQDPQLGPSVSYACDHADCTSLGYGSSCGNLNLAQNVSYAFNSYYQVSNQLDSACKFPGLSIVSTRDPSVGSCKFKIMIK 453          
BLAST of CX047560 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.976e-43
Identity = 84/165 (50.91%), Postives = 111/165 (67.27%), Query Frame = -2
Query:  410 GFMSHISVGKGTPMRPGPIDAYLFSLIDEDAKSVDPGNFERHWGIFTYDGRPKYQINL-GTTNSGSLVPARSVHYLQKKWCVMKPSARLDDPQVAPSVSYACGLADCTSLGYGTSCGNLDARGNISYAFNSYYQKNNQLDTACKFPNLSMITKADPSVGSCIFQI 901
            G +  +   KGTP+RP  I+ YLF L+DEDAKS+ PG FERHWGIF +DG+PK+ I+L G   S  L+ A++V YL  KWC   P A+ D  ++A ++ YAC  +DCT+LGYG+SC  LDA GN SYAFN ++Q  NQ ++AC F  L+ IT  + S G C F I
Sbjct:  287 GLLPRLGTNKGTPLRPTYIEVYLFGLLDEDAKSIAPGPFERHWGIFKFDGQPKFPIDLSGQGQSKFLIGAQNVPYLPNKWCTFNPEAK-DLTKLAANIDYACTFSDCTALGYGSSCNTLDANGNASYAFNMFFQVKNQDESACYFQGLATITTQNISQGQCNFPI 450          
BLAST of CX047560 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.017e-31
Identity = 68/175 (38.86%), Postives = 103/175 (58.86%), Query Frame = -2
Query:  380 QGFMSHISVGKGTPMRPGPIDAYLFSLIDEDAKSVDPGNFERHWGIFTYDGRPKYQINLGTTNSGSLVPARSVHYLQKKWCVMKPSARLDDPQVAPSVSYACGLADCTSLGYGTSCGNLDARGNISYAFNSYYQKNNQLDTACKFPNLSMITKADPSVGSCIFQITMEPYYGGAE 904
            +G + H+     +  RP P++ Y+ SL+DED +++  GNFERHWG+FT+DG+ KY  +    N    V A++V YL  KWCV+  +  L +   +     AC +ADCTS+  G SC  +   GN+SYAFNS YQ+N+    +C F  L +IT  DPS  +C F I ++  +  ++
Sbjct:  288 KGLIVHLEKKTASLPRP-PVETYIESLLDEDQRNLSAGNFERHWGVFTFDGQAKYNFSFNHKNQ---VNAQNVQYLPPKWCVVNNNKDLSN--ASARALEACAVADCTSILPGGSCSGIRWPGNVSYAFNSLYQQNDHSAESCNFGGLGLITTVDPSEDNCRFSIQLDTSHSSSQ 456          
BLAST of CX047560 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.777e-21
Identity = 64/176 (36.36%), Postives = 89/176 (50.57%), Query Frame = -2
Query:  422 NQGFMSHISVGKGTPMRPG-PIDAYLFSLIDEDAKSVDPGNF-ERHWGIFTYDGRPKYQINLGTTNSGSLVPARSVHYLQK-----------KWCVMKPSARLDDPQVAPSVSYACGLADCTSLGYGTSCGNLDA-RGNISYAFNSYYQKNNQLDTACKFPNLSMITKADPSVGSC 907
            N+G +   S GKGTP+ P    + YLFSL DE+ K   PG   ERH+G+F  D  P Y + L   +  S+ P  S +               KWCV K  A   D Q   +++YACG  DC  +  G +C + ++ + + SY  N+YYQ N   D AC F    ++T +DPS G C
Sbjct:  288 NEGMIRVCSSGKGTPLMPNRTFETYLFSLFDENQK---PGPIAERHFGLFNPDFTPVYDLGL-LRDGASVAPTPSPNPSPNPSPKPAPSGGGKWCVAKDGANGTDLQ--NNINYACGFVDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGC 457          
BLAST of CX047560 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.401e-18
Identity = 54/168 (32.14%), Postives = 89/168 (52.98%), Query Frame = -2
Query:  416 NQGFMSHISVGKGTPMRPG-PIDAYLFSLIDEDAKSVDPGNFERHWGIFTYDGRPKYQINLGTTNSGSLVPARSVHYLQKKWCVMKPSARLDDPQVAPSVSYACGLA--DCTSLGYGTSCGNLD-ARGNISYAFNSYYQKNNQLDTACKFPNLSMITKADPSVGSCIF 907
            N   + H+    GTP RPG  +  Y++ L +ED K+   G  E++WG+F  +G P Y + L  TNSGS++   + +   + +C  +  A  D   +  ++ +ACG    DC+ +  G +C   D    + +YAF++YY +      AC F  ++ IT  DPS G+C+F
Sbjct:  295 NSNLIRHVLNKTGTPKRPGIAVSTYIYELYNEDTKA---GLSEKNWGLFNANGEPVYVLRL--TNSGSVLANDTTN---QTYCTAREGA--DTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANYAFDTYYHQTGNNPDACNFNGVASITTTDPSHGTCVF 452          
BLAST of CX047560 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.243e-17
Identity = 52/169 (30.77%), Postives = 91/169 (53.85%), Query Frame = -2
Query:  416 NQGFMSHISVGKGTPMRPGP-IDAYLFSLIDEDAKSVDPGNF-ERHWGIFTYDGRPKYQINLGTTNSGSLVPARSVHYLQKKWCVMKPSARLDDPQVAPSVSYACG--LADCTSLGYGTSCGNLD-ARGNISYAFNSYYQKNNQLDTACKFPNLSMITKADPSVGSCIF 907
            N   + H+    GTP  PG  +  Y++ L +ED +   PG   E++WG+F  +G P Y + L    +G+++   + +   + +C+ K   ++D   +  ++ +ACG    DC++L  G SC   D    + +YAFN+YYQK  +   +C F  ++ +T  DPS G+C+F
Sbjct:  286 NSNLIQHVINKTGTPKHPGTAVTTYIYELYNEDTR---PGPVSEKNWGLFYTNGTPVYTLRLA--GAGAILANDTTN---QTFCIAKE--KVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPSRGTCVF 444          
BLAST of CX047560 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.207e-16
Identity = 55/168 (32.74%), Postives = 89/168 (52.98%), Query Frame = -2
Query:  416 NQGFMSHISVGKGTPMRPG-PIDAYLFSLIDEDAKSVDPG-NFERHWGIFTYDGRPKYQINLGTTNSGSLVPARSVHYLQKKWCVMKPSARLDDPQVAPSVSYACGLA-DCTSLGYGTSCGNLD-ARGNISYAFNSYYQKNNQLDTACKFPNLSMITKADPSVGSCIF 907
            N   ++H+    GTP+ PG P+D Y+F+L DE+ K   PG + ER +G+F  D    Y + L  ++S S  P+  V      WCV K  A  ++ Q   S+ +ACG   DC ++  G +C   +    + +YA N Y+QK+ +  T C F   + +T  +PS  +C++
Sbjct:  287 NGNLIAHLRSMVGTPLMPGKPVDTYIFALYDENLK---PGPSSERAFGLFKTDLSMVYDVGLAKSSSSSQTPSGKV--TSSGWCVPKKGATNEELQA--SLDWACGHGIDCGAIQPGGACFEPNNVVSHAAYAMNMYFQKSPKQPTDCDFSKTATVTSQNPSYNNCVY 447          
BLAST of CX047560 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.743e-15
Identity = 51/168 (30.36%), Postives = 90/168 (53.57%), Query Frame = -2
Query:  416 NQGFMSHISVGKGTPMRPGPIDA-YLFSLIDEDAKSVDPGNFERHWGIFTYDGRPKYQINLGTTNSGSLVPARSVHYLQKKWCVMKPSARLDDPQVAPSVSYACG--LADCTSLGYGTSCGNLD-ARGNISYAFNSYYQKNNQLDTACKFPNLSMITKADPSVGSCIF 907
            N   + H+    GTP+ P    + Y++ L +ED ++  P   E  WG+F  +  P Y +++  + SG+ +   + +   + +C+      +D   +  ++ +ACG   ++C+ +  G SC   +  +G+ S+AFNSYYQK  +   +C F  ++MIT  DPS GSCIF
Sbjct:  198 NSNLIKHVFDRTGTPLHPEMTSSVYIYELFNEDLRA--PPVSEASWGLFYGNSTPVYLLHV--SGSGTFLANDTTN---QTYCIAMDG--VDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPSHGSCIF 356          
BLAST of CX047560 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.277e-15
Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = -2
Query:  416 NQGFMSHISVGKGTPMRPGP-IDAYLFSLIDEDAKSVDPGNFERHWGIFTYDGRPKYQINL------------GTTNSGSLVPARSVHYLQKKWCVMKPSARLDDPQVAPSVSYACGLA--DCTSLGYGTSCGNLDAR-GNISYAFNSYYQKNNQLDTACKFPNLSMITKADPSVGSCIF 907
            N   + H+   +GTP +PG  ++ Y+FSL +E+ K+    + ER+WG+F  D    YQ++             GT +SGS             WC+   S++  +  +  ++ +ACG    DCT++     C   D    + S+ FNSY+Q+N   D AC F    +    DPS   CI+
Sbjct:  288 NSNIIRHVVTNQGTPAKPGEAMNVYIFSLFNENRKA--GLDSERNWGLFYPDQTSVYQLDFTGKSNGFHSNSSGTNSSGS----------SNSWCIA--SSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRATDVACSFGGAGVKVNKDPSYDKCIY 453          
The following BLAST results are available for this feature:
BLAST of CX047560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
E136_ARATH2.640e-8075.56Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E135_ARATH2.170e-6667.46Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
E138_ARATH1.976e-4350.91Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]
E139_ARATH1.017e-3138.86Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]
E13B_WHEAT2.777e-2136.36Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E132_ARATH6.401e-1832.14Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E133_ARATH9.243e-1730.77Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E137_ARATH1.207e-1632.74Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E131_ARATH1.743e-1530.36Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E1313_ARATH2.277e-1529.44Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14H04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H04-P7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047560 ID=CX047560; Name=CX047560; organism=Citrus sinensis; type=EST; length=908bp
TTTTATTTAAGGAAAGAATATCATAAGTCAATCGAATATGAGAACATCAG
AAATATCCAATATCATTTCAGCCCACACAATCTCTATCCTACCTGGTTAG
GCCTTGATTCACAAAGTTCATGGTACACATCAAAAAAAAAAAAAATCAAA
GTAGAACAATCATGATTACTTAAATAAAGCCTTGCCAATTGCAAAATTAG
ATTTCGTTTGAGCCATTTATCAATCATTTCAACTACTTCTGCATTACCAT
TATCCTACAAAGCAAATGAATGTAATCATGGAAAAATGATTCTTCGTGAT
TAAGAAGCCTCAGAATTCACAGAATTATTAGCACAAAGAGAAAAAGGCCC
ACAACCAACCTTAGTGACCCAATTCTCCTCTCAGCACCTCCATAGTATGG
CTCCATTGTAATCTGAAATATGCAACTTCCAACTGATGGATCCGCTTTAG
TGATCATTGAAAGATTTGGAAATTTACAGGCGGTGTCAAGCTGATTATTT
TTCTGATAGTAGCTGTTAAATGCATATGAAATGTTTCCCCTAGCATCCAG
ATTGCCACATGATGTCCCATAACCAAGGCTAGTGCAGTCAGCAAGTCCAC
AGGCATAGCTCACACTTGGTGCCACTTGAGGATCGTCAAGTCTGGCTGAA
GGCTTCATCACACACCACTTCTTCTGCAAGTAATGAACACTTCTTGCTGG
AACCAAAGACCCCGAGTTTGTGGTGCCAAGATTGATTTGGTATTTAGGTC
TTCCATCATAAGTAAATATTCCCCAATGTCGTTCAAAATTTCCAGGATCA
ACACTTTTAGCATCCTCATCAATCAAACTGAACAAATAGGCGTCAATTGG
CCCAGGTCTCATTGGGGTTCCTTTTCCCACTGAAATATGGGACATGAAAC
CTTGGTTG
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