CX047559

Overview
NameCX047559
Unique NameCX047559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047559 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.285e-16
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:  608 YASIKFLSLCAMICG-VSGLGANWGTQASHPLPPETVVNLLRDNGFQKAKLFDADYGTLRALGKS 799
            + S+  L   A++C   S +GANWGTQASHPLPP+ VV +LR+NG QK KLFDA+Y TLRALGKS
Sbjct:    3 WGSVLLLLAVALLCQRASSIGANWGTQASHPLPPDIVVRMLRENGIQKVKLFDAEYDTLRALGKS 67
[Close]
BLAST of CX047559 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.471e-12
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 2 
Query:  599 FSVYASIKFLSLCAMICGVSGLGANWGTQASHPLPPETVVNLLRDNGFQKAKLFDADYGTLRALGKS 799
            F+V+  I  L   +++  V G+G NWG+QA HPLPP TVV LLR+NG QK KLF+AD   L+AL ++
Sbjct:    7 FAVFFVITLL-YASLLIEVEGIGVNWGSQARHPLPPATVVRLLRENGIQKVKLFEADSAILKALSRT 72
The following BLAST results are available for this feature:
BLAST of CX047559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
E136_ARATH1.285e-1663.08Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E135_ARATH1.471e-1252.24Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14H04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H04-P7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047559 ID=CX047559; Name=CX047559; organism=Citrus sinensis; type=EST; length=801bp
CTTGAACTCATCTCTTTCACCTCAACAGGATCCTTAAGTTGCACTGTTGC
ACATCATTATCCCTCTTCTCTTTCTATTTTACTTTCCAAGTGCCCATTAC
TTCCTAGTCTCTACCTTATTTACTAACACTTCAATCTAGTAACTCATTAA
CTCTGCACAACCACTTCACTAACTCCAAGAATTTTCATTTCTTCTTTTGA
TACACCAATTAATTTCAAAAGAATCTTTTCTAGTATTTTTCTTGCTGTTT
TTAGCTGTATTTTCCGATTCTTCAGCTTCTGCATTTTTATTTCTGTTTCT
TGTTTTACATTATCACTCAGTTTGCATAATCATTCCTACCCATGCAATAA
ATTTTTCCTAGCACCTTTCAAAACACGGCCAGGATTCCATTTTCATTCCT
CTAACACCACAAGATTCCATTTGTTCCACCAATATTCCTCCAGATCAGCT
CTTCACTCTCATAGCTAGATTTGGACATCAACTCTTGTTGCTTAATTCTG
GGATTCTTTTTTTTAATCTTTTGGGGTTGGGTTTTTTTTGGTGCACGGAA
GCTGGCTAGCTACTAGCCATCAAATTCAAAGAAGAAATAATGGCTAGTTT
TTCAGTTTATGCGAGCATTAAGTTCCTTTCTTTGTGTGCAATGATTTGTG
GGGTGAGTGGCCTTGGTGCCAACTGGGGCACACAAGCAAGCCATCCTCTG
CCTCCAGAAACTGTAGTGAATCTACTGAGGGATAATGGGTTCCAAAAAGC
AAAGCTTTTTGATGCAGATTATGGGACACTAAGAGCTTTGGGTAAGTCTG
G
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