CX047554

Overview
NameCX047554
Unique NameCX047554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047554 vs. ExPASy Swiss-Prot
Match: AVP1_ARATH (Pyrophosphate-energized vacuolar membrane proton pump 1 OS=Arabidopsis thaliana GN=AVP1 PE=1 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.389e-89
Identity = 166/174 (95.40%), Postives = 169/174 (97.13%), Query Frame = -2
Query:  383 TMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF 904
            TMKSVGSAALKMVEEVRRQFNTIPGLMEGT KPDYATCVKISTDASIKEMIPPG LVMLTPLIVG FFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAG SEHA++LGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGG+LFK F
Sbjct:  597 TMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGCLVMLTPLIVGFFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGVSEHAKSLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGILFKYF 770          
BLAST of CX047554 vs. ExPASy Swiss-Prot
Match: AVP_PHAAU (Pyrophosphate-energized vacuolar membrane proton pump OS=Phaseolus aureus PE=1 SV=3)

HSP 1 Score: 323.553 bits (828), Expect = 9.954e-88
Identity = 167/174 (95.98%), Postives = 170/174 (97.70%), Query Frame = -2
Query:  383 TMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF 904
            TMKSVGSAALKMVEEVRRQFNTIPGLMEGT KPDYATCVKISTDASIKEMIPPGALVMLTPL+VGI FGVETLSGVLAGSLVSGVQIAISASNT GAWDNAKKYIEAGASEHAR+LGPKGS+ HKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF
Sbjct:  593 TMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLVVGILFGVETLSGVLAGSLVSGVQIAISASNT-GAWDNAKKYIEAGASEHARSLGPKGSDCHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF 765          
BLAST of CX047554 vs. ExPASy Swiss-Prot
Match: AVP_HORVU (Pyrophosphate-energized vacuolar membrane proton pump OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 1.877e-86
Identity = 163/172 (94.77%), Postives = 167/172 (97.09%), Query Frame = -2
Query:  389 TMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFK 904
            TMKSVGSAALKMVEEVRRQFNTIPGLMEGT KPDYATCVKISTDASIKEMIPPGALVMLTPLIVG  FGVETLSGVLAG+LVSGVQIAISASNTGGAWDNAKKYIEAG SEHAR+LGPKGS+ HKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFAT+GGLLFK
Sbjct:  589 TMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGTLFGVETLSGVLAGALVSGVQIAISASNTGGAWDNAKKYIEAGNSEHARSLGPKGSDCHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATYGGLLFK 760          
BLAST of CX047554 vs. ExPASy Swiss-Prot
Match: HPPA_LEPIN (Pyrophosphate-energized proton pump OS=Leptospira interrogans GN=hppA PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.225e-62
Identity = 119/174 (68.39%), Postives = 141/174 (81.03%), Query Frame = -2
Query:  383 TMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF 904
            TMKSVG AA+ MVEEVR+QF  IPG+MEG  KPDY  CV IST A+++EMI PG LV+LTP++VG  FGV+TL+GVLAG+LV+GV +AISA+N+GG WDNAKKYIE  A       G KGS+ HKAAV+GDT+GDP KDTSGPS+NILIKLMA+ SLVFA FF   GGL+FKIF
Sbjct:  537 TMKSVGKAAVDMVEEVRKQFKEIPGIMEGKNKPDYKRCVDISTSAALREMILPGLLVLLTPILVGYLFGVKTLAGVLAGALVAGVVLAISAANSGGGWDNAKKYIEKKA-------GGKGSDQHKAAVVGDTVGDPFKDTSGPSINILIKLMAITSLVFAEFFVQQGGLIFKIF 703          
BLAST of CX047554 vs. ExPASy Swiss-Prot
Match: HPPA_LEPIC (Pyrophosphate-energized proton pump OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=hppA PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.225e-62
Identity = 119/174 (68.39%), Postives = 141/174 (81.03%), Query Frame = -2
Query:  383 TMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF 904
            TMKSVG AA+ MVEEVR+QF  IPG+MEG  KPDY  CV IST A+++EMI PG LV+LTP++VG  FGV+TL+GVLAG+LV+GV +AISA+N+GG WDNAKKYIE  A       G KGS+ HKAAV+GDT+GDP KDTSGPS+NILIKLMA+ SLVFA FF   GGL+FKIF
Sbjct:  537 TMKSVGKAAVDMVEEVRKQFKEIPGIMEGKNKPDYKRCVDISTSAALREMILPGLLVLLTPILVGYLFGVKTLAGVLAGALVAGVVLAISAANSGGGWDNAKKYIEKKA-------GGKGSDQHKAAVVGDTVGDPFKDTSGPSINILIKLMAITSLVFAEFFVQQGGLIFKIF 703          
BLAST of CX047554 vs. ExPASy Swiss-Prot
Match: HPPA_CLOTE (Pyrophosphate-energized proton pump OS=Clostridium tetani GN=hppA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.238e-55
Identity = 108/173 (62.43%), Postives = 129/173 (74.57%), Query Frame = -2
Query:  386 TMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKI 904
            TM+SVG AA +M+EEVRRQF TIPG+MEG   PDY  CV IST A+I+EMI PG L ++ P+ +G+  G E L G+LAG+LVSGV + I  SN GGAWDNAKKYIE GA       G KGSE HKAAV+GDT+GDP KDTSGPS+NILIKLM + SLVFAP    +GG+L  +
Sbjct:  505 TMESVGKAANEMIEEVRRQFKTIPGIMEGKATPDYKKCVDISTAAAIREMILPGVLAIVVPVAMGLLLGKEALGGLLAGALVSGVLVGILMSNAGGAWDNAKKYIEGGAH------GGKGSEAHKAAVVGDTVGDPFKDTSGPSMNILIKLMTIVSLVFAPVVLQYGGILLNL 671          
BLAST of CX047554 vs. ExPASy Swiss-Prot
Match: HPPA1_METAC (Pyrophosphate-energized proton pump 1 OS=Methanosarcina acetivorans GN=hppA1 PE=3 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.554e-48
Identity = 95/163 (58.28%), Postives = 120/163 (73.62%), Query Frame = -2
Query:  416 TMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFF 904
            T+ +VG+AA ++V EVRRQF  I GLMEG   PDY  C+ IST +++KEMIPPG L ++ PL+VG+  G   L G+LAGS+ SG  IAI+ SN GGAWDNAKKYIE G        G KGS+ HKA V GDT+GDP KDT+GP++NILIKLM++ ++VFAP F
Sbjct:  519 TILAVGNAAGEVVVEVRRQFREIAGLMEGKADPDYGKCIAISTHSALKEMIPPGLLAVIAPLLVGLVLGPGALGGLLAGSVASGFMIAITMSNAGGAWDNAKKYIELG------NFGGKGSDAHKAGVTGDTVGDPFKDTAGPAINILIKLMSIVAVVFAPLF 675          
BLAST of CX047554 vs. ExPASy Swiss-Prot
Match: HPPA1_METMA (Pyrophosphate-energized proton pump 1 OS=Methanosarcina mazei GN=hppA1 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.029e-48
Identity = 93/163 (57.06%), Postives = 122/163 (74.85%), Query Frame = -2
Query:  416 TMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFF 904
            T+ +VG+AA ++V EVRRQF  I GLMEG   PDY+ C+ IST +++KEMIPPG L ++ P++VG+  G   L G+LAGS+VSG  +AI+ SN GG+WDNAKK+IE G        G KGS+ HKA V GDT+GDP KDT+GP++NILIKLM++ +LVFAP F
Sbjct:  519 TILAVGNAAGEVVVEVRRQFKEIKGLMEGKADPDYSKCITISTHSALKEMIPPGILAVIAPILVGLVLGAGALGGLLAGSVVSGFMLAITMSNAGGSWDNAKKFIELG------NFGGKGSDAHKAGVTGDTVGDPFKDTAGPAINILIKLMSIVALVFAPLF 675          
BLAST of CX047554 vs. ExPASy Swiss-Prot
Match: HPPA_FUSNN (Pyrophosphate-energized proton pump OS=Fusobacterium nucleatum subsp. nucleatum GN=hppA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.711e-48
Identity = 96/163 (58.90%), Postives = 122/163 (74.85%), Query Frame = -2
Query:  416 TMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFF 904
            TM +VG AA++MVEEVRRQF   PG+M+ T KPDY  CV+IST +S+K+MI PG L ++ P+I+G+ + V+ L G+LAG+LV+GV +AI  +N GGAWDN KK IE G          KGS+ HKAAV+GDT+GDP KDTSGPSLNILIKLM++ SLV  P F
Sbjct:  511 TMTAVGKAAIEMVEEVRRQFREFPGIMDRTQKPDYKRCVEISTHSSLKQMILPGVLAIIVPVIIGL-WSVKALGGLLAGALVTGVLMAIMMANAGGAWDNGKKQIEGGYKG-----DKKGSDRHKAAVVGDTVGDPFKDTSGPSLNILIKLMSIVSLVLVPLF 667          
BLAST of CX047554 vs. ExPASy Swiss-Prot
Match: HPPA_THEMA (Pyrophosphate-energized proton pump OS=Thermotoga maritima GN=hppA PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.361e-44
Identity = 88/162 (54.32%), Postives = 118/162 (72.84%), Query Frame = -2
Query:  416 MKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFF 901
            + +V  AA+KMV+E+RRQ   IPGL+EG  KPDY  C++I++D ++K+M  P  + +LTPL+ G   G E + GVL G+++SG  +AI  +N+GGAWDNAKKY+EAG  E       KGSEPHKA VIGDT+GDPLKDT GPSL+ILIK+M+V S++    F
Sbjct:  563 ISAVTKAAMKMVDEIRRQAREIPGLLEGKAKPDYNRCIEITSDNALKQMGYPAFIAILTPLVTGFLLGAEFVGGVLIGTVLSGAMLAILTANSGGAWDNAKKYLEAGNLEGY----GKGSEPHKALVIGDTVGDPLKDTVGPSLDILIKIMSVVSVIAVSIF 720          
The following BLAST results are available for this feature:
BLAST of CX047554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AVP1_ARATH1.389e-8995.40Pyrophosphate-energized vacuolar membrane proton p... [more]
AVP_PHAAU9.954e-8895.98Pyrophosphate-energized vacuolar membrane proton p... [more]
AVP_HORVU1.877e-8694.77Pyrophosphate-energized vacuolar membrane proton p... [more]
HPPA_LEPIN3.225e-6268.39Pyrophosphate-energized proton pump OS=Leptospira ... [more]
HPPA_LEPIC3.225e-6268.39Pyrophosphate-energized proton pump OS=Leptospira ... [more]
HPPA_CLOTE2.238e-5562.43Pyrophosphate-energized proton pump OS=Clostridium... [more]
HPPA1_METAC1.554e-4858.28Pyrophosphate-energized proton pump 1 OS=Methanosa... [more]
HPPA1_METMA2.029e-4857.06Pyrophosphate-energized proton pump 1 OS=Methanosa... [more]
HPPA_FUSNN7.711e-4858.90Pyrophosphate-energized proton pump OS=Fusobacteri... [more]
HPPA_THEMA1.361e-4454.32Pyrophosphate-energized proton pump OS=Thermotoga ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14G12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14G12-N23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047554 ID=CX047554; Name=CX047554; organism=Citrus sinensis; type=EST; length=905bp
TTTTTTTTGGTCCAAGTGCACTTTCATTGCATCAAAAAGTAACAAAATGT
TTGATAGGAAGCTGTTCTAAGACTACACAGGACAAAAAAATAATAATAAA
AATAAAATAGACCAAAACATTTCACCACCGTGTCTCCCCCTTCCAACATG
AAAAAGTGCATCTCCGTCGTCATTCTAACCATCTCAATTTATCATCATCG
TCATCTCATCCCCGCATCAAAAACAGTATTCACTGGAAACTAAGGAAAAC
TAAATTAAAACCCCATACCATGGGGAAAAAGATGGTCGATAGAGGTCAAG
GATGGGTGAGGATACTGTTACAATCGAAAGCAAAAGTCAATGACCCTCTT
CCGCAATGTATTTCACATTATCTCTTTCTTCAGAAGATCTTGAAAAGCAG
GCCACCGTGGGTGGCAAAGAAAGGAGCAAACACCAGTGATTCAACAGCCA
TGAGTTTGATGAGGATGTTTAGAGATGGGCCTGACGTATCCTTCAGTGGA
TCTCCAATGGTATCACCAATCACAGCTGCCTTGTGTGGCTCAGAACCCTT
TGGGCCAAGGGTCCTTGCATGCTCTGAGGCACCAGCCTCAATATATTTCT
TGGCATTATCCCATGCACCGCCAGTGTTGGAGGCAGATATTGCTATCTGA
ACACCCGAAACAAGGGAGCCAGCGAGCACACCAGAAAGGGTTTCCACACC
AAAGAAGATTCCAACAATGAGGGGTGTGAGCATGACAAGAGCACCAGGAG
GAATCATCTCCTTGATGGATGCATCGGTTGAGATCTTAACACAGGTAGCG
TAATCAGGCTTGGTAGTGCCCTCCATGAGACCTGGAATGGTGTTGAACTG
TCTGCGGACTTCCTCAACCATCTTCAAAGCTGCACTTCCCACACTCTTCA
TTGTC
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