CX047541

Overview
NameCX047541
Unique NameCX047541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.912e-107
Identity = 196/213 (92.02%), Postives = 208/213 (97.65%), Query Frame = -1
Query:  197 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 835
            GVELELIAIATGGRIVPRFQELTPEKLGKAG+VREKSFGTT++RMLYIEHCANS+AVT+FIRGGNKMMIEETKRSIHDALCVARNLIRN SIVYGGGAAEIACS+AVDAAAD+YPGVEQYAIRAFA+ALD++PMALAENSGLQPIETLSAVK+QQI+EN P  GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS SEY
Sbjct:  323 GVELELIAIATGGRIVPRFQELTPEKLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVPMALAENSGLQPIETLSAVKSQQIKENIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISNSEY 535          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 1.767e-104
Identity = 190/213 (89.20%), Postives = 205/213 (96.24%), Query Frame = -1
Query:  197 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 835
            GVELELIAIATGGRIVPRFQEL+ EKLGKAGLVREKSFGTT+DRMLYIE CANS+AVTIFIRGGNKMMIEETKRSIHDALCVARNLI NNSIVYGGG+AEI+CSIAV+AAADR+PGVEQYAIRAFADALDAIP+ALAENSGL PI+TL+ VK+Q ++ENN  CGIDCNDVGTNDM+EQNVFETLIGKQQQILLATQVVKMILKIDDVI+PSEY
Sbjct:  323 GVELELIAIATGGRIVPRFQELSTEKLGKAGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKMMIEETKRSIHDALCVARNLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQYAIRAFADALDAIPLALAENSGLPPIDTLTVVKSQHVKENNSRCGIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVITPSEY 535          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 1.767e-104
Identity = 190/213 (89.20%), Postives = 205/213 (96.24%), Query Frame = -1
Query:  197 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 835
            GVELELIAIATGGRIVPRFQEL+ EKLGKAGLVREKSFGTT+DRMLYIE CANS+AVTIFIRGGNKMMIEETKRSIHDALCVARNLI NNSIVYGGG+AEI+CSIAV+AAADR+PGVEQYAIRAFADALDAIP+ALAENSGL PI+TL+ VK+Q ++ENN  CGIDCNDVGTNDM+EQNVFETLIGKQQQILLATQVVKMILKIDDVI+PSEY
Sbjct:  323 GVELELIAIATGGRIVPRFQELSTEKLGKAGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKMMIEETKRSIHDALCVARNLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQYAIRAFADALDAIPLALAENSGLPPIDTLTVVKSQHVKENNSRCGIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVITPSEY 535          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 9.432e-82
Identity = 150/212 (70.75%), Postives = 181/212 (85.38%), Query Frame = -1
Query:  200 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 835
            G E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  327 GPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 9.432e-82
Identity = 150/212 (70.75%), Postives = 181/212 (85.38%), Query Frame = -1
Query:  200 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 835
            G E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  327 GPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.584e-81
Identity = 149/212 (70.28%), Postives = 181/212 (85.38%), Query Frame = -1
Query:  200 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 835
            G E+ELIAIATGGRIVPRF ELT EKLG AG+VRE SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E+NP  GIDC   G+NDM+ Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  327 GPEIELIAIATGGRIVPRFSELTSEKLGFAGVVREISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.584e-81
Identity = 149/212 (70.28%), Postives = 180/212 (84.91%), Query Frame = -1
Query:  200 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 835
            G E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAE +C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  327 GPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAETSCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.362e-80
Identity = 148/212 (69.81%), Postives = 181/212 (85.38%), Query Frame = -1
Query:  200 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 835
            G E+ELIAIATGGRIVPRF ELT EKLG AG+V+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E+NP  GIDC   G+NDM+ Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  327 GPEIELIAIATGGRIVPRFSELTSEKLGFAGVVQEISFGTTKDKMLVIEKCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 3.140e-77
Identity = 141/208 (67.79%), Postives = 171/208 (82.21%), Query Frame = -1
Query:  212 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 835
            G++LE IA+ATGGRIV RF++++ +KLG+AGLVRE  FGTTQDR L IE C N+ AVTIF+RGGNKM++EE KRSIHDALCV RNLIR+N ++YGGG++EI+C + + A AD    +EQYA+RAFADALDAIP+ALAENSGL  IE+LS VK  QI+E NP  GIDCN   TNDM+ Q+VF+TL GK QQ LLA QVVKMILKIDD+I
Sbjct:  323 GLDLEKIAMATGGRIVARFEDVSADKLGRAGLVREVGFGTTQDRYLSIEDCPNTNAVTIFVRGGNKMIVEEAKRSIHDALCVTRNLIRDNRVIYGGGSSEISCGLKISAMADDIASIEQYAVRAFADALDAIPLALAENSGLPSIESLSTVKAMQIKEKNPRLGIDCNHRDTNDMKAQHVFDTLPGKTQQFLLANQVVKMILKIDDII 530          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.939e-75
Identity = 133/208 (63.94%), Postives = 175/208 (84.13%), Query Frame = -1
Query:  212 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 835
            G E+ELIAIAT GRIVPRF++L+ +KLG AG+VRE SFGTT+D++L IE CANSRAVT+F+RG NKM+++E KR++HDALCV RNLIR+N +VYGGGAAEI+CS+AV   A++ PG++QY++ AFADALD IP+ALAENSGL  IE L+AVK + ++EN    GIDC   G+NDMR+Q V + LIGK+QQ+LLATQ+ +M+LK++D+I
Sbjct:  329 GPEIELIAIATNGRIVPRFEDLSSDKLGSAGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFADALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDII 536          
The following BLAST results are available for this feature:
BLAST of CX047541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPE_ARATH2.912e-10792.02T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPE2_AVESA1.767e-10489.20T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE1_AVESA1.767e-10489.20T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE_MACFA9.432e-8270.75T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN9.432e-8270.75T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPE_RAT3.584e-8170.28T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_PONAB3.584e-8170.28T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_MOUSE1.362e-8069.81T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPE_DICDI3.140e-7767.79T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPE_SCHPO2.939e-7563.94T-complex protein 1 subunit epsilon OS=Schizosacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14G06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14G06-N11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047541 ID=CX047541; Name=CX047541; organism=Citrus sinensis; type=EST; length=835bp
TTTTTAAACAAGCAAAATCATCAATTCTCACTACCAGAAAAAGTAACTCA
CGGTACAATTTTAACAAAAACCAACCCATAACCTTTAAAGTCAGTCGTTA
TCAAGTGGACAGGGTCGATACCAAGCCAACAAAATACATGAAATGCATTC
TTGGTGAAGCAAAATCAAACAGAAACTTAGACCTTAGAATGAATCAATAT
TCAGAGGGGGAAATGACATCATCAATTTTCAAAATCATCTTCACAACTTG
TGTTGCGAGAAGAATCTGCTGCTGCTTCCCAATCAAAGTCTCAAAGACAT
TTTGCTCACGCATGTCATTGGTTCCAACATCATTGCAGTCTATTCCGCAG
TTTGGATTATTCTCCCTAATTTGCTGATTTTTCACAGCCGATAGCGTCTC
AATAGGTTGGAGACCACTATTTTCTGCAAGTGCCATCGGGATAGCATCCA
ACGCATCTGCAAATGCCCTGATAGCATACTGTTCAACTCCCGGATATCTA
TCTGCAGCTGCATCTACAGCAATTGAGCAAGCTATCTCAGCTGCACCCCC
GCCATACACAATAGAATTGTTGCGAATCAGATTCCTAGCCACACACAAGG
CATCATGTATGCTCCGCTTGGTCTCCTCTATCATCATTTTGTTACCTCCA
CGGATGAAAATGGTTACAGCCCTAGAATTTGCACAGTGTTCAATGTACAG
CATTCTATCTTGTGTAGTACCAAAAGACTTTTCTCGAACCAAACCAGCCT
TTCCAAGTTTTTCTGGTGTCAACTCCTGAAACCTTGGAACAATTCTTCCA
CCTGTGGCTATGGCAATCAGCTCCAATTCTACACC
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